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mmu_ciIapp_312
Basic information of circular RNA
PanCircBase ID:
mmu_ciIapp_312
mm39_Chr. Position ID:
chr6|142244236|142244548|+
Gene name:
Iapp
Transcript:
ENSMUST00000041993.3
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
312
Exon/intron sizes in nt:
312
Flanking exon/introns:
chr6:142244236-142244562
Splice length:
312
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAAGGATACCCTGTGCTTGGGAAGATAATACTTAGTAAAAGAAAACAATCTTTGTGTTACCTGTAGGACGCACGCATTTCAGGAAAAAGAGTAAAAGAATAGTGTATGGTAATAGAAATTCTCAGGTTGTTTTACAAAGAAAATTGAACATTTGGTACTATTTCAAAGGTGTTGAGCATCAGTAAAAAAAAAAAAAAGGAAAAATAACAGAGATCTTTGTAAAATACATTTTAAACTTTCTTTGATGGTTCCAATTTACACTTGCATCAATCAGAACAGAAAGAGGTAGCTTGATTTCTGTGGGTTTTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACACTTGCATCAATCAGAACAGA
58.61
TTTCCTGAAATGCGTGCGTC
59.76
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTCCAATTTACACTTGCATCA
59.41
TTTCCTGAAATGCGTGCGTC
59.76
153
PCR template sequence:
AGATCTTTGTAAAATACATTTTAAACTTTCTTTGATGGTTCCAATTTACACTTGCATCAATCAGAACAGAAAGAGGTAGCTTGATTTCTGTGGGTTTTTTGTAAAGGATACCCTGTGCTTGGGAAGATAATACTTAGTAAAAGAAAACAATCTTTGTGTTACCTGTAGGACGCACGCATTTCAGGAAAAAGAGTAAAAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-203-3p(1), mmu-miR-300-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGTGGGTTTTTTGTAAAGGATACCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.902335658
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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