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mmu_ciHyi_129
Basic information of circular RNA
PanCircBase ID:
mmu_ciHyi_129
mm39_Chr. Position ID:
chr4|118218927|118219056|+
Gene name:
Hyi
Transcript:
ENSMUST00000194248.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
129
Exon/intron sizes in nt:
129
Flanking exon/introns:
chr4:118218927-118219070
Splice length:
129
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGATGGAAGCATACCTAATGTGTTGGGGAGACAGGAGGTACACAGTGGGGACAAAGAGGAACAGATGCGTTTACTGCCCAGTGACAGACTGGGACAGATGTGGGGAGGAGCCCTTGACAGCCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGCGTTTACTGCCCAGTGA
59.96
CCTCTTTGTCCCCACTGTGT
59.53
124
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACAGATGCGTTTACTGCCCA
59.96
CCTCTTTGTCCCCACTGTGT
59.53
128
PCR template sequence:
ACAGATGCGTTTACTGCCCAGTGACAGACTGGGACAGATGTGGGGAGGAGCCCTTGACAGCCTCGTAAGAGATGGAAGCATACCTAATGTGTTGGGGAGACAGGAGGTACACAGTGGGGACAAAGAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCTTGACAGCCTCGTAAGAGATGGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIHYI_129_ORF_1
0.8237
0.112671406
0.13092238
189
ORF sequence:
ATGCGTTTACTGCCCAGTGACAGACTGGGACAGATGTGGGGAGGAGCCCTTGACAGCCTCGTAAGAGATGGAAGCATACCTAATGTGTTGGGGAGACAGGAGGTACACAGTGGGGACAAAGAGGAACAGATGCGTTTACTGCCCAGTGACAGACTGGGACAGATGTGGGGAGGAGCCCTTGACAGCCTC
Peptide sequence:
MRLLPSDRLGQMWGGALDSLVRDGSIPNVLGRQEVHSGDKEEQMRLLPSDRLGQMWGGALDSL
IRESfinder result
IRESfinder score
0.559513797
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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