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mmu_ciHuwe1_654
Basic information of circular RNA
PanCircBase ID:
mmu_ciHuwe1_654
mm39_Chr. Position ID:
chrX|150699167|150699821|+
Gene name:
Huwe1
Transcript:
ENSMUST00000026292.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
62
Exon/intron offsets:
0
Genomic length:
654
Exon/intron sizes in nt:
654
Flanking exon/introns:
chrX:150699167-150699821
Splice length:
654
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTTCTGTTTCCAAAAAAATCATTGCTTGGACAGACATAACCCTCCAAACACTTTCCTCCAGGTCGGTGTGTGAGTCGGGGGTGGGGGTTGTTGAAGATAGACTAGCAATAAGAGGATGCAGGTGTTGCGCGTAATGGAATGAGTTCAGGCTTAGAAGTCAGGTTAGCCTTAGCTCACTCATTCTCTACTTTTATAAAATAGGACCATTATTTAATATCTCTAATCCTCATTGACAAACACTATGTTAGTCAGTTTTCCATTGCTGAATCAAATGTCTGAAATAGCCAACTTTTAAAAGAAACGATAAGCTTAGCTCACAGTTACAGAGTTTTCAGTCTTTGGTCAGTTGTTTCTTGGTCTCTGTAGTAAGAGACTACTATATAATGGTGGCCACACACAATCTACATGAAAGTCTTTATAAAGGTTGACTTGACAGTGTATACCACTAATGAACTTTTTAAATTTATTTGAGCTGTTGAACTATTTGAAGCTTAGGAAGATGGGTTATGGCTCTTCTCTATATCTTTGCAAGCAGTGGAAACACAAATGGCTGATTTTCCTCAACCCATGATTTGTGTTTCTTTTCTCTGAGTATACCTTTGAACATCCATGAAGATGTAAGTTCCTTTACATCTTACAATCTCTTTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGATTTTCCTCAACCCATGA
58.91
CACCGACCTGGAGGAAAGTG
60.32
173
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGATTTTCCTCAACCCATGA
58.91
CACACCGACCTGGAGGAAAG
60.32
175
PCR template sequence:
GCTGATTTTCCTCAACCCATGATTTGTGTTTCTTTTCTCTGAGTATACCTTTGAACATCCATGAAGATGTAAGTTCCTTTACATCTTACAATCTCTTTAGGTAAGTTTCTGTTTCCAAAAAAATCATTGCTTGGACAGACATAACCCTCCAAACACTTTCCTCCAGGTCGGTGTGTGAGTCGGGGGTGGGGGTTGTTGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-146a-5p(1), mmu-miR-690(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACAATCTCTTTAGGTAAGTTTCTGTT
siRNA sets
AAACTTACCTAAAGAGATT,AGAAACTTACCTAAAGAGA,AACTTACCTAAAGAGATTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.882965675
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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