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mmu_ciHsp90ab1_145
Basic information of circular RNA
PanCircBase ID:
mmu_ciHsp90ab1_145
mm39_Chr. Position ID:
chr17|45882545|45882690|-
Gene name:
Hsp90ab1
Transcript:
ENSMUST00000165127.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
145
Exon/intron sizes in nt:
145
Flanking exon/introns:
chr17:45880476-45882690
Splice length:
145
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTATTCTGTTGTTGAATTTCTAAGGCTTCACGGAAGTGTGTGTGTGTGTGGGAGTGATTGAGAAGAACAGTTCAGTTGATGTTGAAGGGGGAGGGACTGTTTGGAAAAATAAAATAATCTGGCTTTTTGCGTTTACTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGATGTTGAAGGGGGAGGGA
60.18
CTCCCACACACACACACACT
60.11
123
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGATGTTGAAGGGGGAGGGA
60.18
TCACTCCCACACACACACAC
60.11
126
PCR template sequence:
GTTCAGTTGATGTTGAAGGGGGAGGGACTGTTTGGAAAAATAAAATAATCTGGCTTTTTGCGTTTACTACAGGTGAGTATTCTGTTGTTGAATTTCTAAGGCTTCACGGAAGTGTGTGTGTGTGTGGGAGTGATTGAGAAGAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-188-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCGTTTACTACAGGTGAGTATTCTGT
siRNA sets
AATACTCACCTGTAGTAAA, ATACTCACCTGTAGTAAAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.82327957
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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