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mmu_ciHnrnph1_404
Basic information of circular RNA
PanCircBase ID:
mmu_ciHnrnph1_404
mm39_Chr. Position ID:
chr11|50275563|50275967|+
Gene name:
Hnrnph1
Transcript:
ENSMUST00000126737.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
404
Exon/intron sizes in nt:
404
Flanking exon/introns:
chr11:50275563-50276603
Splice length:
404
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGATTTTTCTCATATACTTGGAGTAGATTTCTTTAGTTGGGGGTGATAATAAAGGCTCTTTTAAAAAAGAGTGGGGTATTTTAAATGTTGTTTTTTATTATAATACTTAATTTGCAGAAATAGTCATTGGGGAGGAGAAGCATATGTTCTATTCATTGCAATTTTGGAACAGAAAATATCTGTGTTTACTAAAACATTAATTTGCTTTTCTGTTGTAGCATTAATTTTTTGACACGGTGATTCTTAAATATTTAGAATGGTGGTTGGGTTCAGGGATAATATTTTACTAATTGGTTAAGCTAGGGATGGTGTTTTTTGTTTTTTGTTTTTTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTCTAAAGAATGGTGATTTTGGT
58.93
ACAACATTTAAAATACCCCACTCT
56.51
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTCTAAAGAATGGTGATTTTGGT
58.93
ACAACATTTAAAATACCCCACTCTT
57.15
154
PCR template sequence:
CTAGGGATGGTGTTTTTTGTTTTTTGTTTTTTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATCCTTTTGCAGGTGAGTGATTTTTCTCATATACTTGGAGTAGATTTCTTTAGTTGGGGGTGATAATAAAGGCTCTTTTAAAAAAGAGTGGGGTATTTTAAATGTTGTTTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AATCCTTTTGCAGGTGAGTGATTTTT
siRNA sets
AAAAATCACTCACCTGCAA, AAATCACTCACCTGCAAAA, AATCACTCACCTGCAAAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.974444254
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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