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mmu_ciGse1_548
Basic information of circular RNA
PanCircBase ID:
mmu_ciGse1_548
mm39_Chr. Position ID:
chr8|121295222|121295770|+
Gene name:
Gse1
Transcript:
ENSMUST00000034279.16
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
548
Exon/intron sizes in nt:
548
Flanking exon/introns:
chr8:121295222-121295790
Splice length:
548
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACCTGGGCTGAGCTGTGTGGAGGGAATGGCCTGTGCCTGCCCCAGCAGTAAGGAGGTGCCATCCCAACGCTGGCGAGACTGGGAGGAGGTGTGCTCTGTCACCCTGGGTGGATCCAGGATCCCATGGGTGCCCCCAGAACAGCCAAGACGCTAGGGAGGGGAGTTGCCATCACTGCGGTAGAACCTTGGTTGGTCTCTGCCTTTTGCCATGGTGATGGTGAACACCAGAGTCACGCCACTGAGATACCCCCAATCTGACCTTTTGTTCTGTGTCAGAGTTCTAAAGCCAAGGCTAGCCTGGGACTCAACCGTCCCTCAAATTCATAGCTATGGTCCTGTGTCAGCCCCCAAAGTGTTGGGAGCGCAGGCATGAGCTATCCCGATCTTGATTTATTTCATGAAAATTTTTGTGGTTGATGTCCTCAAAAACATGTAAGTTGCTCTGAGCCAGCCACACACACCACATCTCCTCTCTCCAAGGATGAGGCAGTGTTTCCTTCAGTCCTGGGCTCCGAGCACGGGCAAGGGCACTGGCGCCCCCGCAGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACACACACCACATCTC
60.25
GGGATGGCACCTCCTTACTG
59.82
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACACACACCACATCTC
60.25
TGGGATGGCACCTCCTTACT
60.25
165
PCR template sequence:
GCCAGCCACACACACCACATCTCCTCTCTCCAAGGATGAGGCAGTGTTTCCTTCAGTCCTGGGCTCCGAGCACGGGCAAGGGCACTGGCGCCCCCGCAGTGTACCTGGGCTGAGCTGTGTGGAGGGAATGGCCTGTGCCTGCCCCAGCAGTAAGGAGGTGCCATCCCAACGCTGGCGAGACTGGGAGGAGGTGTGCTCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-150-5p(1), mmu-miR-24-3p(1), mmu-miR-362-5p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCGCCCCCGCAGTGTACCTGGGCTGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.488537952
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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