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mmu_ciGrid2ip_706
Basic information of circular RNA
PanCircBase ID:
mmu_ciGrid2ip_706
mm39_Chr. Position ID:
chr5|143365147|143365853|+
Gene name:
Grid2ip
Transcript:
ENSMUST00000110733.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
706
Exon/intron sizes in nt:
706
Flanking exon/introns:
chr5:143365147-143365854
Splice length:
706
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGCCTCACTCACATGGAAGGCTGGAGCTGCTGTCGTCTCCTGTAAAACGGTCTTAGCGAAACAATGAGAGTGTTAGCTAGGCTTCTCGAGGGGAACAGAACCCATAAAGCGAATGTTAATCCCAAAGAGGATTTATTAGATTGGCTTCCATAAGGGTCGCTCAGTCCCAACAATGGCCATAGGCAGGCATGCGGGAGAGGCTGGACGCCCAGCTGCTCAGGCCTCGAGCTGGAGGCATCTGTAGTCCAAACTCAGTGCTGAAGCCCTGAAGGGTTCCAAAGAGCTGCTCATCCAGTCTACACTGGGAGCCTGAAGAATCTGGGTTCTGATGGCTATAGCAGCAGCAGCAGCTGTCGCCGCAGAACATAACCACTCGCCAGCAAGGAGGGAAGGCAGGCAGGCAAAGCATTGCTTTCCCATCATTTCTTTATATCTAAGCTGCAGCAGGAAGGCCTTGCCTATCTATCCTGGAGTAGATGAGTCTTCCCTTCTCAGTTAATCCTTCCAGGTAGTGTGTTCACAGACCCACCCAGAAATGTGACTCAGCTGATTGCAGAACCAGCTGAGCTGACAACCAAGACTAATCATCATACTGAGGAAATTGGGAGACAACAAGGCTGAGTGGGACTGTGCAGGTCTGGACTGAGCTCAGATACAATAACATATTTTGGTGGTGATGAGTTCCATGGCCTCTTCCTGGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GACAACAAGGCTGAGTGGGA
59.89
TTACAGGAGACGACAGCAGC
59.76
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACAAGGCTGAGTGGGACTG
59.89
TTACAGGAGACGACAGCAGC
59.76
141
PCR template sequence:
TGGGAGACAACAAGGCTGAGTGGGACTGTGCAGGTCTGGACTGAGCTCAGATACAATAACATATTTTGGTGGTGATGAGTTCCATGGCCTCTTCCTGGCAGTAAGGCCTCACTCACATGGAAGGCTGGAGCTGCTGTCGTCTCCTGTAAAACGGTCTTAGCGAAACAATGAGAGTGTTAGCTAGGCTTCTCGAGGGGAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-140-5p(1), mmu-miR-199a-5p(1), mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-340-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTCTTCCTGGCAGTAAGGCCTCACT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.500662586
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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