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mmu_ciGon4l_406
Basic information of circular RNA
PanCircBase ID:
mmu_ciGon4l_406
mm39_Chr. Position ID:
chr3|88814889|88815295|+
Gene name:
Gon4l
Transcript:
ENSMUST00000081695.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
30
Exon/intron offsets:
0
Genomic length:
406
Exon/intron sizes in nt:
406
Flanking exon/introns:
chr3:88814889-88815295
Splice length:
406
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGACTGACCACGCTACGGCTGCTGCTCCTGCCTTCTTTGCTTTTCCCCACACTGCAGCAAGCTATGTCAGCTGCTCTAACAGCTTTGCAGTGGTGGGCGTGCCACGCTGTCGTGGACAGACTATGTGACTCCCTTTCCCACTCCCATCTCTCACACGCATGGTCTACACAGTGAGTTCCAGACTAGCCAGAGCTACATAGTGGGACCCTGTCTCAAAAATAACAATAAAACAGATTCCTAGAGTCTTTCCCTACGCTTGTGTAATCAATATTCTACCAACCCTGGCCTCCTTTGAGTGGCTCCATTCTCTCCAGCAGCCTTTCTACTGGAACTACATTGTTGTAGCTCCCCAGGGCTGTGGTTCCCAGTGCATACTCTGATCCCATATTCCTTCTAAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCATTCTCTCCAGCAGCCTT
59.74
AAGCAAAGAAGGCAGGAGCA
60.18
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCATTCTCTCCAGCAGCCTT
59.74
CATAGCTTGCTGCAGTGTGG
59.55
171
PCR template sequence:
CCATTCTCTCCAGCAGCCTTTCTACTGGAACTACATTGTTGTAGCTCCCCAGGGCTGTGGTTCCCAGTGCATACTCTGATCCCATATTCCTTCTAAGCAGGTAAGTGACTGACCACGCTACGGCTGCTGCTCCTGCCTTCTTTGCTTTTCCCCACACTGCAGCAAGCTATGTCAGCTGCTCTAACAGCTTTGCAGTGGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-320-3p(1), mmu-miR-185-5p(1), mmu-miR-383-5p(1), mmu-miR-705(1), mmu-miR-3087-3p(1), mmu-miR-3470b(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCTTCTAAGCAGGTAAGTGACTGAC
siRNA sets
AGTCACTTACCTGCTTAGA, CACTTACCTGCTTAGAAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.790713588
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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