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mmu_ciGolt1b_187
Basic information of circular RNA
PanCircBase ID:
mmu_ciGolt1b_187
mm39_Chr. Position ID:
chr6|142338147|142338334|+
Gene name:
Golt1b
Transcript:
ENSMUST00000032372.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
187
Exon/intron sizes in nt:
187
Flanking exon/introns:
chr6:142338147-142339653
Splice length:
187
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTCTTTGAATATGTGCCCTTTAAATTTTCATCAGGCAGTTTTATCTACTTTCTAATCCTAGGAAATGACTGTCAGGGTTACTGTTGGCAGCAGCAACGAAGCCCTCAGCCTTTCGTGACTAGCAGATAAGCTTAAAGCTACTACGCTTACAACCCTAATAAGTGTTTGTGGGAGATTTACAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTCAGCCTTTCGTGACTA
59.1
TGCCAACAGTAACCCTGACA
59.16
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCAGCCTTTCGTGACTAGCA
59.03
TGCCAACAGTAACCCTGACA
59.16
172
PCR template sequence:
CAGCAACGAAGCCCTCAGCCTTTCGTGACTAGCAGATAAGCTTAAAGCTACTACGCTTACAACCCTAATAAGTGTTTGTGGGAGATTTACAATGTAAGTCTTTGAATATGTGCCCTTTAAATTTTCATCAGGCAGTTTTATCTACTTTCTAATCCTAGGAAATGACTGTCAGGGTTACTGTTGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAGATTTACAATGTAAGTCTTTGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.811056476
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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