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mmu_ciGolga3_700
Basic information of circular RNA
PanCircBase ID:
mmu_ciGolga3_700
mm39_Chr. Position ID:
chr5|110352909|110353609|+
Gene name:
Golga3
Transcript:
ENSMUST00000112512.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
13
Exon/intron offsets:
0
Genomic length:
700
Exon/intron sizes in nt:
700
Flanking exon/introns:
chr5:110352909-110353642
Splice length:
700
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGAATGCAATACATAGGTTCTTTTGAGTTGTGAAGGCTCAGCTAAGTGTGCTGGGGTCTTCCTGTGGACCGGGTGGAATGGGGAGCATTGACCAAGAAAGACTTTTAAAACAATCTAGAGATAAGGCCTTCCTGAAAGTAGTATTCAGATAAATGCATGCTGTGATGCCACATGAAAGAAACAAAAAAGAGTGAGCTCAGATCAGGACATGCCATGTGTTACAGGGTCTGGTGAGCTAGTTTCCTGAGCCTTGAAGTCCACAGGGTTGGCACCAGACAGAAAGGAGAGCGTGAGTGCTCTGCAGATAGCCTGAGTTTAGGCAGGATGCAGTCACAGGGAGGATCATGCGGCCACCTACCCATTCCCTCTGCCAGGACATTGGCTTTAGGAAGGCATTTAATGGCCTGGAAATAGTGGTCAAATTTGTTGTGGTTGTTTTGTTTCGCTTTATGTGTATGGATGTTTTGGCTGCATGTCTATCTCTTTACCATGTATGTAATACCCATTAAAGCTAAAAGAGGATATTGAATTGTTTAGAACTGGAATTATATATGATTATGAACTGCTATGTGCGTTCTGAGAATTGAAATTGAGTCCTCTAAGAGAGCAGCCAGGTCTCTCAACCCCCAGAAATATATTCGATCGCTAGGAAGTGTTGTCATCAGTGACAGATATCTGGAGTAGGTGGCCTTTTACTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGTCTCTCAACCCCCAGAA
59.81
TCAATGCTCCCCATTCCACC
60.03
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGTCTCTCAACCCCCAGAA
59.81
AAGACCCCAGCACACTTAGC
59.96
148
PCR template sequence:
CTAAGAGAGCAGCCAGGTCTCTCAACCCCCAGAAATATATTCGATCGCTAGGAAGTGTTGTCATCAGTGACAGATATCTGGAGTAGGTGGCCTTTTACTTGTGGAATGCAATACATAGGTTCTTTTGAGTTGTGAAGGCTCAGCTAAGTGTGCTGGGGTCTTCCTGTGGACCGGGTGGAATGGGGAGCATTGACCAAGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-384-3p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGCCTTTTACTTGTGGAATGCAATA
siRNA sets
ATTCCACAAGTAAAAGGCC, TATTGCATTCCACAAGTAA, TTCCACAAGTAAAAGGCCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.650585574
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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