top of page
mmu_ciGng12_728
Basic information of circular RNA
PanCircBase ID:
mmu_ciGng12_728
mm39_Chr. Position ID:
chr6|66891494|66892222|+
Gene name:
Gng12
Transcript:
ENSMUST00000043148.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
728
Exon/intron sizes in nt:
728
Flanking exon/introns:
chr6:66891494-66920808
Splice length:
728
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTAAAGTCTTTTTATGACTGCTTCATATGTTAACTTGGATATACTTAAAGCATGCTATTGAACTTGGACTTAGTGACTGATCCTGCAGGAAGTACTAAGTATCCAATGATGTTCTTCTCTTGGTCTGATTTGATAAGGGGTCAACGTGGACAGGATAGATAGATTGAATAGTCTCCCATTTGTGAGCAGAGTTCTAGGATGTTACTGCAGAAAGACTTTTTTATGAGGAAGAGTGGAGGGAGGCTCAGTTTTGCCCACATTCATAGGCCTGCTTGAAAGCAGCTCCAGGACTCCCAGTCCAGCGGCAGGAGCCAGCAACTACAGCCTTGTCTCACACAGTGCAGGCTGCGGCATCTGTGTGGTAGGGCACCCTGCAACTCCGAACTGTCTGTTCTGCCTCGTGTGGGAGCCACCATACATGGCTCTTGAGTGTTAGATGTTGACTGTGTTGCTTTCTCTTGCTCAGTTGAGAATTTAAATGTATATAATTATGTCCATTTTGGGGCTTCAAGAGGGAATGAGTTTAGCCTCGTGCTCCTCATTGTGGCCCAGTGGGAGGCCGAACCTTCTCCCCTTTCAAAGGGTATCTCTTGCCCAGTGAGGCTGGACGAGGGATCTCTGGGGCCCCCTCTTTGGATGCTTTTTGATTAGATCTGCTTTCTACTTATAATGACATGTCTGTGCCTCTGTGTCCTCATCTCCCAGCTGACGTTAATACCTGTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTGTGCCTCTGTGTCCTC
60.04
ACTTCCTGCAGGATCAGTCAC
59.72
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTGTGCCTCTGTGTCCTC
60.04
CTTCCTGCAGGATCAGTCACT
59.45
144
PCR template sequence:
CCCCCTCTTTGGATGCTTTTTGATTAGATCTGCTTTCTACTTATAATGACATGTCTGTGCCTCTGTGTCCTCATCTCCCAGCTGACGTTAATACCTGTCTGTGAGTAAAGTCTTTTTATGACTGCTTCATATGTTAACTTGGATATACTTAAAGCATGCTATTGAACTTGGACTTAGTGACTGATCCTGCAGGAAGTACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-15b-5p(1), mmu-miR-709(1), mmu-miR-143-3p(1), mmu-miR-149-5p(1), mmu-miR-384-3p(1), mmu-miR-188-3p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
TTAATACCTGTCTGTGAGTAAAGTCT
siRNA sets
AGACTTTACTCACAGACAG, GACTTTACTCACAGACAGG, ACTTTACTCACAGACAGGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.780135409
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page