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mmu_ciGm45805_91
Basic information of circular RNA
PanCircBase ID:
mmu_ciGm45805_91
mm39_Chr. Position ID:
chr8|127484610|127484701|-
Gene name:
Gm45805
Transcript:
ENSMUST00000212695.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
91
Exon/intron sizes in nt:
91
Flanking exon/introns:
chr8:127484003-127484701
Splice length:
91
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGGTTTTTCTCATCCCTTACTCTTGGGAAAGTGAAGTGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTGTAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGTGTGTGTGTGTGTGTG
59.13
AGGGATGAGAAAAACCCACA
56.63
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGTGTGTGTGTGTGTGTG
59.13
AGGGATGAGAAAAACCCACA
56.63
62
PCR template sequence:
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTGTATGTGGGTTTTTCTCATCCCTTACTCTTGGGAAAGTGAAGTGAAAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-466b-3p(2), mmu-miR-382-3p(1), mmu-miR-377-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTGAATGTGTATGTGGGTTTTTCTC
siRNA sets
AAACCCACATACACATTCA, AAAACCCACATACACATTC, AAAAACCCACATACACATT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIGM45805_91_ORF_1
0.4818
-0.462737167
0.003954542
99
ORF sequence:
ATGTGTATGTGGGTTTTTCTCATCCCTTACTCTTGGGAAAGTGAAGTGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTGTAT
Peptide sequence:
MCMWVFLIPYSWESEVKVCVCVCVCVCVCVNVY
IRESfinder result
IRESfinder score
0.783967506
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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