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mmu_ciGm15943_77
Basic information of circular RNA
PanCircBase ID:
mmu_ciGm15943_77
mm39_Chr. Position ID:
chr15|58078077|58078154|+
Gene name:
Gm15943
Transcript:
ENSMUST00000147638.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
77
Exon/intron sizes in nt:
77
Flanking exon/introns:
chr15:58078077-58183835
Splice length:
77
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGCGGCGCGTTGGGAAGATGCTGGGGAACGACGCAGGCGGCGACCGGGACAAGAGTGGGTCAACTAGTGTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGGGACAAGAGTGGGTCAAC
60.6
TTCCCCAGCATCTTCCCAAC
59.96
61
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGGGACAAGAGTGGGTCAAC
60.6
GTTCCCCAGCATCTTCCCAA
59.96
62
PCR template sequence:
GCGGCGACCGGGACAAGAGTGGGTCAACTAGTGTGGAGGTATGCGGCGCGTTGGGAAGATGCTGGGGAACGACGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AACTAGTGTGGAGGTATGCGGCGCGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIGM15943_77_ORF_1
0.7757
0.172490398
0.117478122
150
ORF sequence:
ATGCGGCGCGTTGGGAAGATGCTGGGGAACGACGCAGGCGGCGACCGGGACAAGAGTGGGTCAACTAGTGTGGAGGTATGCGGCGCGTTGGGAAGATGCTGGGGAACGACGCAGGCGGCGACCGGGACAAGAGTGGGTCAACTAGTGTGG
Peptide sequence:
MRRVGKMLGNDAGGDRDKSGSTSVEVCGALGRCWGTTQAATGTRVGQLVW
IRESfinder result
IRESfinder score
0.025184521
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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