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mmu_ciGm10037_93
Basic information of circular RNA
PanCircBase ID:
mmu_ciGm10037_93
mm39_Chr. Position ID:
chr13|67981990|67982083|+
Gene name:
Gm10037
Transcript:
ENSMUST00000221266.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
93
Exon/intron sizes in nt:
93
Flanking exon/introns:
chr13:67981990-67991114
Splice length:
93
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAAAACAGTGTTCCCAGGTTGGTAGGAAAGAGGAGGTCGGAACAACGTGGAGGTGCAATGGTCGGCTTCCCCATATACTTTGAAACATGAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAATGGTCGGCTTCCCCATA
59.82
ACCAACCTGGGAACACTGTT
59.37
61
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAATGGTCGGCTTCCCCATA
59.82
TGTTCCGACCTCCTCTTTCC
59.03
82
PCR template sequence:
CGTGGAGGTGCAATGGTCGGCTTCCCCATATACTTTGAAACATGATGTAAAAACAGTGTTCCCAGGTTGGTAGGAAAGAGGAGGTCGGAACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-92a-3p(1), mmu-miR-25-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTGAAACATGATGTAAAAACAGTGT
siRNA sets
TTTTTACATCATGTTTCAA, TTTTACATCATGTTTCAAA, TGTTTTTACATCATGTTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.40125721
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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