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mmu_ciGit1_99
Basic information of circular RNA
PanCircBase ID:
mmu_ciGit1_99
mm39_Chr. Position ID:
chr11|77393892|77393991|+
Gene name:
Git1
Transcript:
ENSMUST00000037285.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
99
Exon/intron sizes in nt:
99
Flanking exon/introns:
chr11:77393892-77394181
Splice length:
99
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTCTGCCTCAACAAGCTGGGACTACTTAGAGCAGCCCTCTCCTGTCTTGCCAGCCTCGCCCCTCCCATCACCTCCCCATGCCCTTTTCTTTGATC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCCCCATGCCCTTTTCTT
59.96
ACAGGAGAGGGCTGCTCTAA
59.96
74
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCCCCATGCCCTTTTCTT
59.96
AGGAGAGGGCTGCTCTAAGT
59.66
72
PCR template sequence:
TTGCCAGCCTCGCCCCTCCCATCACCTCCCCATGCCCTTTTCTTTGATCGTGAGTCTGCCTCAACAAGCTGGGACTACTTAGAGCAGCCCTCTCCTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-196a-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTTCTTTGATCGTGAGTCTGCCTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.852260633
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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