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mmu_ciGigyf2_883
Basic information of circular RNA
PanCircBase ID:
mmu_ciGigyf2_883
mm39_Chr. Position ID:
chr1|87306805|87307688|+
Gene name:
Gigyf2
Transcript:
ENSMUST00000027475.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
883
Exon/intron sizes in nt:
883
Flanking exon/introns:
chr1:87306805-87307689
Splice length:
883
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACTAAAGTGTTGAGATTGTAATGTAATTAAGCATTTGCTGGTCTATAAAACTCACCCTAGTGGTATTCTATAGGACTTGCCTGTGTGCCAGTTATTTGACAGGCTGAGGAAGGAGATTCTGGAGTACTGGCTATCCTGCACAATTTAGCAAACTTCTGAACTCAAAATAAAAATGGAAAAAAATGGCTAGGATTCTAACCCATTGGTAGCTCTCTAGGGAGGTTCAGCCCTCAGTACTCCAAACAAAACAAAGCACACCGCGTTCCTTTCATGAGTGGTACAGGGTTGCGTGTTCCTGTGATCCTAACACTTGGGAGGCCAAGACAGAAGAATCATGAGTTCCAGACCAAAATGGGCTGCATGGTGTGACCTAGAGAATCACAGAAGTTGGGTGGGAGTGTTGTCTCCTCTCTAGCCCCTGGCCTTCCCTCAAGAAAGAACATTTTGAAAACACAGAACTTATCCCTTTTCTGCTTTTCCTGAAATTTCTGTACAATAAAACATAATATATAATTCTTACAGTTAAGGATGAGCCTTGATCTCAAAATAAGGGTAGAAGGGTTAAGGTTGTAACAGTGGTGGCTGTCTTGCTCAGCACCCTGAGGTTTAGTACTCAGAACCACAAATGTGGGAAAATATTGCCAAGGTAGTATATATAACATGGTCTGTAATGTTTCCAGGTAAAATAATAATATTCTAGTCATTGGGAGCTAAGGTTTGGTAGGTGGCCAGGTGGAATTTTTGTTCTCATCATTGCTTTCCTATATTTTCTAAATACTAACTGGCAGATCTGCTGCTAAAGGGACTGCAGGAAAGGAGTATCATGATAGGAAATCTATGTTGTTTTTAAGGTGTTTTTGAAATTTATTTTGTCTTTTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGGACTGCAGGAAAGGAGT
60.47
GGCACACAGGCAAGTCCTAT
60.04
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCTAAAGGGACTGCAGGA
59.38
GGCACACAGGCAAGTCCTAT
60.04
179
PCR template sequence:
ACTGGCAGATCTGCTGCTAAAGGGACTGCAGGAAAGGAGTATCATGATAGGAAATCTATGTTGTTTTTAAGGTGTTTTTGAAATTTATTTTGTCTTTTTAGTAACTAAAGTGTTGAGATTGTAATGTAATTAAGCATTTGCTGGTCTATAAAACTCACCCTAGTGGTATTCTATAGGACTTGCCTGTGTGCCAGTTATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-15b-5p(1), mmu-miR-433-3p(1), mmu-miR-182-5p(1), mmu-miR-5101(1), mmu-miR-188-3p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTGTCTTTTTAGTAACTAAAGTGT
siRNA sets
CTTTAGTTACTAAAAAGAC,TTTAGTTACTAAAAAGACA,TTAGTTACTAAAAAGACAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.782850022
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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