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mmu_ciGgcx_53
Basic information of circular RNA
PanCircBase ID:
mmu_ciGgcx_53
mm39_Chr. Position ID:
chr6|72394921|72394974|+
Gene name:
Ggcx
Transcript:
ENSMUST00000205738.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
53
Exon/intron sizes in nt:
53
Flanking exon/introns:
chr6:72394921-72406159
Splice length:
53
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTTCCCCTTGCTGGATGCCTTGCGCCCACTGCCACTGGACTGGATGTATCTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
CACTGCCACTGGACTGGATGTATCTTGTTTCCCCTTGCTGGATGCCTTGCGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-18a-5p(1), mmu-miR-181b-5p(1), mmu-miR-3061-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGATGTATCTTGTTTCCCCTTGCT
siRNA sets
CAAGGGGAAACAAGATACA,AAGGGGAAACAAGATACAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIGGCX_53_ORF_1
0.7081
-0.199410207
0.016388889
90
ORF sequence:
ATGCCTTGCGCCCACTGCCACTGGACTGGATGTATCTTGTTTCCCCTTGCTGGATGCCTTGCGCCCACTGCCACTGGACTGGATGTATCT
Peptide sequence:
MPCAHCHWTGCILFPLAGCLAPTATGLDVS
IRESfinder result
IRESfinder score
0.326318456
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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