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mmu_ciG6pc2_1082
Basic information of circular RNA
PanCircBase ID:
mmu_ciG6pc2_1082
mm39_Chr. Position ID:
chr2|69053387|69054469|+
Gene name:
G6pc2
Transcript:
ENSMUST00000129288.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
1082
Exon/intron sizes in nt:
1082
Flanking exon/introns:
chr2:69053387-69056155
Splice length:
1082
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCAGCTTCTGAAGCATTAGCAAGACAGCGTTGAGCATGCGAGGTCGTTAGTAAACATTCATTTGAATACATTTACAGTTTTTCAACAAAATGTGCTTATTCGATTCTTTCATAGCCCATGTAGCAGAATGAGTGGAAAATGAATATTCTGCTTCAAGATAATGTTCTAATTAGCTCACAGCTATTACCACTTTTATAATTGAGTTGGAAATGTTTATCTGATTAATGACTTGCTAAATACGCCTTTGGGATTCCAAAATTCAATTATTATTTTGGTACCTCATAAACAAGTCATCTAGACTTGCATAAGGAAACATTTTTGCATGCACATTCTCTTGCCTTAAGATTCACTTAAATTTTTAAGGATCATCGTAGCTCTTAAATGTATCCATTTATTTAGTAAAATTATGCTTCCTACTTTGAACACCCAATGCTTTTAAGATCAGTAAAATATATTCTAGCTGTTAAAGTCAATGCAGTCTTTTTAATTAAAACATTCTAGAGGCAAAATTAAATTTGAATGTTTGACCTACTGCTAACAGATCTCTTAATGTGTAGAAGCATGTAGAACTTTAAGATAACTCACTATTTGTAGAAAGTGATATTTTTCTTCTCTTCTCTTTTTGAAATTCATTGTAATTACAGTAATCCAAAACACCACTTTGTCACAAAGTATACAGTTTTGATTAGAAACAGAAATGAGCAAAAAAAAATCTTATGAAAATATTAAAATCTGAGCAATTTTAAAAGAAAAATAAAGCTGTATTGAGTGTCAGGAATCCTCAAATGTTATGCTGTTGACAAGCTGGCCAAAATTCAGTTACAGAAAGAAATTTGTCAATACTTTTCTTAAATATGGCATATAACCATGCCAGTATATAACATTTCTTTTAAAATAAAGAATTAAAAACACATTCTACTTCTAAAGAGTAGTCTTGAATAATGTAAGAAATAAGTCTGAGTGGGTCATTCTCCCCTCCAGTTAACAACCTTAAAGAACATTTTTATTCTAAAAAATATTCCTATTCCTTTGTGATGTTTGTAACAGCAATATTTTCTTCATTTCTAAAAATTTAGAGAGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACAACCTTAAAGAACATTTTTATTCT
55.03
ACTAACGACCTCGCATGCTC
60.18
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACAACCTTAAAGAACATTTTTATTCT
55.03
CTAACGACCTCGCATGCTCA
60.18
149
PCR template sequence:
TTAACAACCTTAAAGAACATTTTTATTCTAAAAAATATTCCTATTCCTTTGTGATGTTTGTAACAGCAATATTTTCTTCATTTCTAAAAATTTAGAGAGTGTCAGCTTCTGAAGCATTAGCAAGACAGCGTTGAGCATGCGAGGTCGTTAGTAAACATTCATTTGAATACATTTACAGTTTTTCAACAAAATGTGCTTAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-221-3p(1), mmu-miR-31-5p(1), mmu-miR-222-3p(1), mmu-miR-30d-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAATTTAGAGAGTGTCAGCTTCTGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.92125136
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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