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mmu_ciFtl1_412
Basic information of circular RNA
PanCircBase ID:
mmu_ciFtl1_412
mm39_Chr. Position ID:
chr7|45108095|45108507|-
Gene name:
Ftl1
Transcript:
ENSMUST00000094434.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
412
Exon/intron sizes in nt:
412
Flanking exon/introns:
chr7:45108084-45108507
Splice length:
412
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAAGCGGGGGTATTGGGCACTACCGAGCATGTGCGTTTACTTGCCATCCCCATAGTTTGGGCATCCGGATAGACGTCTTGGAAGGGAGTGGTGGCAGGACTAGTGTAGACAATAGGAGTATGTAGAGCAACTAAACCCACCAGGATGTCAGAAACTGGAAAATGGGGGTAATTACAGAATACAGATGAGGACTGCTGGGCTGGGGAGAGGCGGTGTCTCTCTAGCTAGCATGGAAATCACAATGTAGACCAGGTTGCCTCCTATCAAGAGATCCTCCTGTCTTCTCGCCCAGTCTCTCAGTGGTGGGATTAAAGACAGTATCCCATTATTTTTCCCCACTGTGCCCACTTTTCCTGTGCAGTCAGTTTTATATTGGCTGGGTGAAGGATGTAATCTAGGCTTGATATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTTTTCCCCACTGTGCCCA
60.11
CCACCACTCCCTTCCAAGAC
59.96
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTTTTCCCCACTGTGCCCA
60.11
CCACTCCCTTCCAAGACGTC
60.04
176
PCR template sequence:
TTAAAGACAGTATCCCATTATTTTTCCCCACTGTGCCCACTTTTCCTGTGCAGTCAGTTTTATATTGGCTGGGTGAAGGATGTAATCTAGGCTTGATATTGTAAGAAGCGGGGGTATTGGGCACTACCGAGCATGTGCGTTTACTTGCCATCCCCATAGTTTGGGCATCCGGATAGACGTCTTGGAAGGGAGTGGTGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-697(1), mmu-miR-3061-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TAGGCTTGATATTGTAAGAAGCGGGG
siRNA sets
TTCTTACAATATCAAGCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.680189177
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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