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mmu_ciFlcn_733
Basic information of circular RNA
PanCircBase ID:
mmu_ciFlcn_733
mm39_Chr. Position ID:
chr11|59685233|59685966|-
Gene name:
Flcn
Transcript:
ENSMUST00000102697.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
733
Exon/intron sizes in nt:
733
Flanking exon/introns:
chr11:59685230-59685966
Splice length:
733
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGTGTGAGACACATGCTGCCTGCTGCTCTGAAAGGCTCCCGAATCCAGCCCAGGGGTGCACCCGGATCCAAATCACAGACTTTAGGGCGAAGCAGTACTCTGCAGCGCCAGCGAGGACGGCCTGGGCTTGCCCGGCGCCCCTGGAGCTGTGCCTTCTGTTTGCAGTAGGACTGGTCTGTGCCGTGGTGTTTGGCTGTTAAGTTCCCGTACTGTGTGTCTGTGTGGCCTGAGCCCTCCAGGCAGTTTCCATCTCTGGCAGAGGGTCTCAGTCTCCCTGATGCTCTGACCCTTTAATTCCGTTCCTCATGTTGTGGTGACCCCCCAACCATCAAATTACTTTTGTTGCTACTTCACAACTGTAATTTTGCTACTTGTTAGGAATTGTAATATAAGTATTTGTGTTTTCCAGTGGTCTCAGGAGACTCCTGTGAAAAAGGGTAGTTCAACCCCAGGGGGGGTCACAACCCCTAGGATGAGAACCACTGATCTACAGGCTCAAGCAGTAGTGAGACCATTTACAGAGGACTGCTTAGGAAAACTTATGTCATTTATGTTCTAGTTTAACTTAGGCAAGAGTTCCCCTGTAATGCAGTTAATGAATCAACTGCAGAAGGCATTATGCCCCTTTGCCCACATGAGCCTGTCCCTGATGTTTAAGCCGGGGTTTGGGGAGCGGTTTGCAGTGCAGTCAAGGGTCACTTTACAAGCTAGCATGTGTTTTGTTGCCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CATGAGCCTGTCCCTGATGT
59.45
ATTCGGGAGCCTTTCAGAGC
60.11
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATGAGCCTGTCCCTGATG
59.45
ATTCGGGAGCCTTTCAGAGC
60.11
145
PCR template sequence:
GCCCACATGAGCCTGTCCCTGATGTTTAAGCCGGGGTTTGGGGAGCGGTTTGCAGTGCAGTCAAGGGTCACTTTACAAGCTAGCATGTGTTTTGTTGCCAGTAAGTGTGTGAGACACATGCTGCCTGCTGCTCTGAAAGGCTCCCGAATCCAGCCCAGGGGTGCACCCGGATCCAAATCACAGACTTTAGGGCGAAGCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-3065-5p(2), mmu-miR-140-5p(1), mmu-miR-15a-5p(1), mmu-miR-101a-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-217-5p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTTTTGTTGCCAGTAAGTGTGTGAG
siRNA sets
ACTTACTGGCAACAAAACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIFLCN_733_ORF_1
0.7624
0.036915596
0.192239329
315
ORF sequence:
ATGCAGTTAATGAATCAACTGCAGAAGGCATTATGCCCCTTTGCCCACATGAGCCTGTCCCTGATGTTTAAGCCGGGGTTTGGGGAGCGGTTTGCAGTGCAGTCAAGGGTCACTTTACAAGCTAGCATGTGTTTTGTTGCCAGTAAGTGTGTGAGACACATGCTGCCTGCTGCTCTGAAAGGCTCCCGAATCCAGCCCAGGGGTGCACCCGGATCCAAATCACAGACTTTAGGGCGAAGCAGTACTCTGCAGCGCCAGCGAGGACGGCCTGGGCTTGCCCGGCGCCCCTGGAGCTGTGCCTTCTGTTTGCAGTAG
Peptide sequence:
MQLMNQLQKALCPFAHMSLSLMFKPGFGERFAVQSRVTLQASMCFVASKCVRHMLPAALKGSRIQPRGAPGSKSQTLGRSSTLQRQRGRPGLARRPWSCAFCLQ
IRESfinder result
IRESfinder score
0.71374193
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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