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mmu_ciEss2_1962
Basic information of circular RNA
PanCircBase ID:
mmu_ciEss2_1962
mm39_Chr. Position ID:
chr16|17725806|17727768|-
Gene name:
Ess2
Transcript:
ENSMUST00000232423.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
1962
Exon/intron sizes in nt:
1962
Flanking exon/introns:
chr16:17725783-17727768
Splice length:
1962
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGAACTCCCTCTTTTAGTCTCATAGTCAAGACTACTTGGGAATTGTATTCTTGTGAATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTCTTGTGAATTTTCTTAGGGTCACATAAGTATCCACTTTTGGGATCAGAGACACTGGTCTGGGAGGCAGAAGAGCAGAGGCCAGCTCCCGGGTGTGGAGGTACTGTGTTCTCTGCCTCTGGCCTGTCTCTAGAAAGAGAGCCCAGTACCGTCCCAGTCTGTGTTCAGTGTTCCAGCCTTGTGAGCTTTGTCTCCTGAAAATGCCTTAGGCTCCTCTACCTTCTTTCTTCCAAGGCAGTCACTTGTGTCTCTCCCTTCAGGTCGGTATTCAATTGTTAACTGTTTGGGCTTAGAGGCGGAAGCTAATCTGGACACTGGGTTCTTGAACTTTTGTGTAATGTTGGAGCCACCTGGGCCTCTGTTTCTCACCGAGTGCCTTTAGTTTTCTGATTTGTTTGTTTTGTTGAGACCAGAGAGTCTCACTGTGTTTCCCTCACTGTTCAGTGGGTGGGGGGTGAGTGGGTGCAGGGGGAGCATTTCTGTTTCTTGCCTCTCACCCTAATTACTACCTGGTGAGCCCTCCCAGAGAGTAGGGCCTAGGTCTTGCCTCCACATTTAGAGTATCATGTGGTATACCATTAAGACACACATGTAGAACAGATGAGTGTTTGTTTTCGACATGTTTCCATACCAAGTATGAGATGTATCTTAAGGTTAGGAGGAACTCTATAAATCTATTTATATGTGAGCGTTGCCACTAAGGGACTTGTCTGGGTCTGTAGTAGAATGTATCACTAGACATAGACAAAGGCGTTTCTGTGCCAGGCTCTAGTGGACAGCATACTGTACTAGAGCGAGTGTGCAGCATGCTCACACAAACGTGTTTTCTCAACAGCCCAGCCTTTCCTGCCAGGGACATGCTATGGTGGTAGTTCTTCTTGGAGCTTGACCCTTAATTGAACTACAGCAGAGAAATAGGACAATTTGAAGGTGTTTTCTTTTTATACATATATTTTACCAGTAGCCTTGGCTGGCCTGGAGATTGCTCTGTAGATCAGGCTAACCTCGAACTCAAATAGCCCATCTGTTTTTGCCTCCTGAGTGCTGGGATTAAAAGCATGCTCCACCACCACCTGGCCCAAGGTTACCCTTTTCTAACCTCAGGACTTGAACTTAGAACCACTGTGTTAGGCATTGGCTGGTGGTCAAGACTGCTAGTAGAACAGATGAGAAACCTCCCCTTCACACAGCCCCCTGAAACTTGCAGTGCTGCATCTTCAAGAGTATCACTTTCCTCGGTAGCAGGGATCAAGGTGGTATGGTTAGCTTTTTGGCCCAGGGACTGTGTGGTGCTCCGTGGAGCCCTGGGCCATATGGGCTCCTGCCTTAGGGATTAACTGTCATACCCTGAGGCATTTGTGGCCACCACTCATCCATAATATCAGTCAGAAAGGAAAGGGAAAGATAATTCCAGGAGGAAAGAAGAGCTCATGGGACTGTAGAGGTAGATCCTACAGGATTAATACACTTTGGGCAGAGGAAGAGCCTACTAAACTGTCGTCATGTATCTGACCCTGCCCCTTCATGAGTCAACCCGATCCCAGACTTCTCTTGGCAACTAGCAGATCAATAGAACTGGCCAGTTGGCCATGGTTGCCACCTGGGTTTATCTGAACAGTCGGAATTAGTCTGTCACCTAGCAGGAGCTGGGGTTGTAGCCCTTATGAAGTGGGACGGTCTTCCTCAGCCCTGCAGTGCTAATCATGCAGTGTGTGTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTGTCACCTAGCAGGAGC
59.83
TCACAAGAATACAATTCCCAAGT
56.1
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTGTCACCTAGCAGGAGC
59.83
TTCACAAGAATACAATTCCCAAGT
56.78
153
PCR template sequence:
TCGGAATTAGTCTGTCACCTAGCAGGAGCTGGGGTTGTAGCCCTTATGAAGTGGGACGGTCTTCCTCAGCCCTGCAGTGCTAATCATGCAGTGTGTGTTTGTGAGTGAACTCCCTCTTTTAGTCTCATAGTCAAGACTACTTGGGAATTGTATTCTTGTGAATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(2), mmu-miR-709(2), mmu-miR-124-3p(1), mmu-miR-140-5p(1), mmu-miR-134-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-7b-5p(1), mmu-miR-31-5p(1), mmu-miR-101a-3p(1), mmu-miR-298-5p(1), mmu-miR-217-5p(1), mmu-miR-185-5p(1), mmu-miR-339-5p(1), mmu-miR-10b-5p(1), mmu-miR-139-5p(1), mmu-miR-128-3p(1), mmu-miR-511-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-3065-5p(1), mmu-miR-323-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAGTGTGTGTTTGTGAGTGAACTCC
siRNA sets
GTTCACTCACAAACACACA, ACTCACAAACACACACTGC, AGTTCACTCACAAACACAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.852856359
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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