top of page

mmu_ciEps15_2523

Basic information of circular RNA
PanCircBase ID:

mmu_ciEps15_2523

mm39_Chr. Position ID:

chr4|109227875|109230398|+

Gene name:

Eps15

Transcript:

ENSMUST00000102729.10

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

20

Exon/intron offsets:

0

Genomic length:

2523

Exon/intron sizes in nt:

2523

Flanking exon/introns:

chr4:109227875-109230419

Splice length:

2523

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTGAGTGGCAGGATTCAAGACTATTCAGCTGCATGTACAAGTGTTTAAGGAAATGTATTGAATATATAGCAGTGGAAGCTTCCCTTAGCTTACTTTAATGGTCCACATTTTAATGGTTTCATACTTTGATCATCCACTGGAGAGGAGTAGATGATTTATAGTGTCTCAGGATGAAGTTGTCCTTACCCCATTGGTGATGTGTGTGACTGAAAGTCCAAAAGCCAGTCTTAAGTAAAACTTTTTATAAATATCTGTTGTATTAGTTTTAAAAATGGAAATTACTTAAAGGGAGACATTAAATTCTTCTCTTTTTTTTTAAGATTATTTATTTTATTTGTATGGGTACACTGTCACTGTCTTCAGACACACCAGAAGAGGGCACCAGATCCCGTTACAGATGGTGGTAAGCCACCATGAGGTTGCTGGGAATTGAACTAAGGACTTCTGGAAGAGCAGTGCTCTTAACTGCTGAGCCTTCTCTCCAGCCCAAAGGGAGACATTAATATTTTAGAAAAATAAAATCATTCATGTTGTTTATAGTTACACCTGGAATGTTAATCTTGAAAAGTATAAATTTGCACTGAATGTCAGGCTCTGCTTAACAGCCACAGACGGTGATCCAAAGCCCTCAGTGCTATACAGCCATGGCTCCAATCTTCATTTTCAACTTTGCAAGGCAGATGTTGATACCTCAGCTTTAAAAATAAAGATATTTTAGATTCAAAGCATTGACTCTACTGAATGCAGTGGTAAAAAGGTATAACCCCAGCACTGGAGAAGTGGAAGCAAAGGATTCAAAGCCAATCTTGGCTGCATAGTTAGTTTGAGAATATCTTAGGCTACATGGCATCCTGGCTGGAGAGATGACTCAGCAGTTAAACATATGTATTTCTCTTCCAGAAAGACCCAAGTTCAGTTTCCAACACCCATGTCAGGCAACACCCATATTCACAACTGCCTGTAACTCCAACTCCAGAGGATACATTGCCTTTAACGTCTGAGGTACTGACACACATGAGACATGCACTTATGTACACATGATCAAAAATAAATCTTTAAAAAGAAATCTCATTACTTTAATATGCCCAAGACATTTGTTTCTGAGACTTTTTAAAACTATTTATATAGGGGCTACGGAGATGGCTCAGCAGATAACAGACTTGGGTTCAGTTCCCAGCACCCACCCGCAGATCACAGCTGTCTGTAACTCCAGTTCCAGGGGATCTGACACCATCACCAGCCCTCCACAGGCACCAGGCATGTGGCTGTGGCATGTGAGACAGACAGATAGATACACACACACACACACACACACACACACACACACACACACACAGACACAAACAAGAGCACATAGATATATATACATGTAGCTCAAACACTCACATAAAATAAAAATAAATGTATACTCTGGATATTTTAAAATAATCAAAATAGAATAATACTATAAAATATTCAGCTTGTTTTTGTTTGGAGTTTGGCAGCATTATTTCTGTGGTAAACTAGACCAAGAAAGGCACAATTAACTGACAGGGATTTTACACAGCTATTTTGTCATCTGTTAATCTTAAGTGAAGATTACCTCCTTAGAAGAGTAATTGGTTTGGTTTAGGTTGGGTTGGGTTGGGTTGGGTTTTTTTTTTTTTTTTTTTTTTGTATTCTTAAATTATCTCCTTACTGTATTCATTAATAAGAGTTACTTGCCCAGCAGGTGGTATTTTCCACTGATGTAAATTTTGAGGAACACCTCTATAACTGAATATTTGTGGTCTCCGCAAGACTATCGCACCTAGTTTATAATGTAGACCATATGCCAGATTCCTCTAAAATATGGCAGTCTGAATTCTCCTCCTTCTTCATGTTAACTCTATTCCCCACTGCTCTCTGCCCTTCCTAACTTAAAATAACATATGTCTCCTGTTTGTCTCCTGCCTGGGATGTTTCACCCACTGCTCTCTGCCCTTCCTAATTTAAAATAACATATGTCTCCTGTCTGTCTCCCTGCCTGGGATGTTTCACCCACTTGTGCTTACTTTTTATCTTGTGCTTTTCAGAACAAATACCACCTTGCTTTCATCTCATAGTTTCTCTGTTAAAATAGAAGGTTGCCGCCGATATAATAGTCATCACACCTATCTCTTCCTTTCTGTGTCCCTGGATGGTCCTAACTCAGTGGCAGAGTGCTTGGTTAGGATGTGTGAGCTCTAGGTTCAATTCCAGTACTACCAAAAAGTGACTCTGCAAAACGAAGGGTTGGAATTGTGGTTGGAGAAAGACACATGAAGCCTATTGAATGTTGGTGACTGGATGTTCACATAAAGTTAACTTGTTAAATTATACATATGCCACATACTTTTTAGATAAATATTTTGTAATCAGAGAATAATTGTTTCCATTCATTGAGACTATATCAGGAAAGGAAAAACTCTGTTCTAAATGTTTGTTTTCTAATTCAGAACTTTGTAAAGCCTTCTTTTAGGTTCGACAGCGCAGTTCCACCTATGAAATATTGCCTCTCAGTCA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TTAGGTTCGACAGCGCAGTT

59.97

CATTAAAGTAAGCTAAGGGAAGC

55.38

148

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TTTAGGTTCGACAGCGCAGT

59.97

CATTAAAGTAAGCTAAGGGAAGC

55.38

149

PCR template sequence:

AACTCTGTTCTAAATGTTTGTTTTCTAATTCAGAACTTTGTAAAGCCTTCTTTTAGGTTCGACAGCGCAGTTCCACCTATGAAATATTGCCTCTCAGTCAGTGAGTGGCAGGATTCAAGACTATTCAGCTGCATGTACAAGTGTTTAAGGAAATGTATTGAATATATAGCAGTGGAAGCTTCCCTTAGCTTACTTTAATG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

30

Interacting miRNAs (#binding sites)

mmu-miR-181a-5p(1), mmu-miR-221-3p(1), mmu-miR-19b-3p(1), mmu-miR-130a-3p(1), mmu-miR-19a-3p(1), mmu-miR-217-5p(1), mmu-miR-101b-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-181b-5p(1), mmu-miR-495-3p(1), mmu-miR-431-5p(1), mmu-miR-125a-5p(1), mmu-miR-494-3p(1), mmu-miR-301b-3p(1), mmu-miR-511-3p(1), mmu-miR-467b-5p(1), mmu-miR-370-3p(1), mmu-miR-297a-5p(1), mmu-miR-301a-3p(1), mmu-miR-342-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-190b-5p(1), mmu-miR-5101(1), mmu-miR-697(1), mmu-miR-574-5p(1), mmu-miR-181d-5p(1)

siRNAs for circular RNA silencing
Junction sequence

TGCCTCTCAGTCAGTGAGTGGCAGGA

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.873050324

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

bottom of page