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mmu_ciEpn1_1179
Basic information of circular RNA
PanCircBase ID:
mmu_ciEpn1_1179
mm39_Chr. Position ID:
chr7|5098973|5100152|+
Gene name:
Epn1
Transcript:
ENSMUST00000098845.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
1179
Exon/intron sizes in nt:
1179
Flanking exon/introns:
chr7:5098973-5100152
Splice length:
1179
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTCACCGCTCCTCTTGACCCCTGGGAAGCCCCGTACTCGGTTGCTTCTTGTCTCTGCCTTGTTCCAGGTGGTGCCTGCTCTACTTGAGGGGGTAGAGTGCACATGATAGAGTGAGTCAAGTGCAGCTTCCCTTCTTCACAGAGATGTGTAACAATGGATATCCTCTCCACACTCCTGTCTGACCTCTTTCTGCTTCTGGATCATTTATTACGTGGGGATAGGAATTGGAGAAATGTGGGCACCCCCTTGGGCTGGGTGCGGTGGGTTGTCTTCTGTTTAACCGCGTGAGGCCCTGGAACAGACTAGCACCTGCCTTGACTGTAGACTGTAGGTCTGTGCATCTTGACTGCAAATACCCCAAGAGTGGGCCTGCGTCTCCTTGTCAGTGCCTTACCCACAGCCACACACAGGCCTGCTTACCTTTGGTCATTGTTTGTTTTGAGATGAGACATTGCTAGGTTGCTAGCTTGTTATCCTTCTGCCTTGGTTTGAGTGTCTGGAAGTATGGTGCATTCCCCATACTCCCCGGTACCTTTACTTGTTATACTGGAACCGAACCTCATTTGTTCCTTACCATTGAGTTCCAGCTTTTTCCATTTATTTTGTCTTTTGTTTTGGGGACAGGATCTTGCTATATTCTGTAGCTCAGACTGGCCTTGAAGTCTCTCAAGTGCTGGGATTATTTGTTTGCACCCCTGGGCAATCTTTAAATAATGTTTATTTTCCTGATTCAATGAGCCAGCTTCCAATGAAGTGCTGGTTGTGGCATAGAGATGCGTTTCCATTGGTTCATTCCTAGAGGGAAAAGGTTTGTCCTCCAGCCCTTAGATGTCATGACCTGTCCCAGGGCTGTGGGTGTCTGCTTGGTTTCTGCGCTGAAGTGCTTGCTCATTTGAGACTGCGAGTGTCCCGAGTGTCCCGTAGACACTCAGAGACTGTACTTCTGGAGCACTGTGGGCTCTCCTGAGATCTTGAGTCTATCATTCCCTCTGTCCTCCTTCTCCACAGTAAGATCCTCGCGGTTTTTAGTCCAAGCTCAGCTCAGCCTGCCCCTTCCTGAGACCTCCCACCGCCTCCCCCCACCCCCACCCCCCACCCCCACGTCCTCCCTCCCTGCTCCCCCCAACTCAGGCTGGGCCTGCTACTCCATCTGAGCACTGTCCTGGCTTTTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGCCTGCTACTCCATCT
61.05
ACCCCCTCAAGTAGAGCAGG
60.62
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGCCTGCTACTCCATC
59.55
ACCCCCTCAAGTAGAGCAGG
60.62
140
PCR template sequence:
CCCCCCACCCCCACCCCCCACCCCCACGTCCTCCCTCCCTGCTCCCCCCAACTCAGGCTGGGCCTGCTACTCCATCTGAGCACTGTCCTGGCTTTTTCAGGTGAGTCACCGCTCCTCTTGACCCCTGGGAAGCCCCGTACTCGGTTGCTTCTTGTCTCTGCCTTGTTCCAGGTGGTGCCTGCTCTACTTGAGGGGGTAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-26a-5p(1), mmu-miR-122-5p(1), mmu-miR-132-3p(1), mmu-miR-709(1), mmu-miR-320-3p(1), mmu-miR-139-5p(1), mmu-miR-128-3p(1), mmu-miR-26b-5p(1), mmu-miR-212-3p(1), mmu-miR-342-5p(1), mmu-miR-705(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGCTTTTTCAGGTGAGTCACCGCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.864193193
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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