top of page
mmu_ciEno4_2015
Basic information of circular RNA
PanCircBase ID:
mmu_ciEno4_2015
mm39_Chr. Position ID:
chr19|58943981|58945996|+
Gene name:
Eno4
Transcript:
ENSMUST00000054280.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
2015
Exon/intron sizes in nt:
2015
Flanking exon/introns:
chr19:58943981-58946018
Splice length:
2015
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACCTGATAACGGCTAAGACAATTTTCCTATTTGCACCCCCTTCCCCCCCCCCCACCTGCATCACTGATGGATTTTCGAGTAGATCGAGGGAAAGTGAATTAAATGGTATTTTAGGGAATCAAATAAGTAGGAAGAAAGCAAGGACGAAGCCAAAAGGAAACAGACCCTCTTAGAGGTCTGGTTTAGACAGCCTTGGTTCATGTTTGTGATTCCCAGGAGCAAGGTCTTGTTTGTGTGGAAAAGCCAGCATCTGAGGCACCAGGAGGAGGACCTTTCCTGACTTCTGGGCGGCAGCAAGCAGAAACCTGCTTTCCAACACCCGCTGTGTTAGGAAGAACTCCAGGCCAGCAGGCAGCCCAGCACCCGTGGGGCTGTCAGTGCCTGTGTGGGGAAGTGAATGAATGCATCCTGTGCCAAAGCTTCATTCTCGGGCGTGGTGCTATCTTACCCTGTCCTGCTTAGGAATAACTGCATAAGGTTCACGCTATAGTGGTTCACGCTATGGTGAATGCTCTCAGAAAAAGCAGAGGAGACTTTGCCTCTTGCAAAGACTGAAAATTTCCCAAGTTGGTGGGGATAAGTCTGATAAAAGCCTCACTTACTTTCTCTGTGAAGAAGAGCCCTTTTTAAACAAAATTATTACCTCTCACTTTACAAATTTCAGGTGACTAGAGGTGGTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTGTTTGTTTGTTTGTTTGTTTGTAGACAGGGTTTCTATGTCCTGGCTGACCTGGAACTTACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCTGTGACTAGAGTTTATATACGACATACCAGCTGTCAGATTCTGTCAGACTACACACAGTCAGGATCGGGCAGGATCCTGAGACACTATCTCCTGTGCCGAGAGAGGCCCCAGAATGCTCTGCCTGACCCCCCCTTATCACCCTCCCCCTGTGCAGCCCTCACCATCACAGCACGCCTCCCCTTCCTCCTTTCAAAGATTAATTTATTTCCATTTTATGCATATGGCTGTTTTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCATGCCTGTGTACCCTGTGTTTACAGCACCTGAAGAGGCCAGAAGAGAGTGTTGGATTCTCTGGAACTGGAATTATAAACAATTGTTAGCCGCCATGTGGATGCTGGGAACTGAACCCATGTCCCCTGCAAAAGACAAGTACCTTCCAGATAAACCTTCCTTCCAGCCTTACCCCCCCACCCCCCACTGTGCTCTACTCCTTAATTGACAGTGGATTCAAACTAACTTAGCCAGGCCTCCTTGGTGACCTGTGCCATGCATTGCACCAACGTTATCCAGCTTGGCCTAGAGACTATGATAGACCATTTAGCCAGTTTTCACAATGAAGATACCATAGCACCGCCTGTCACTCACACTTAGCCCAACAAAGTGGGGGTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAAACACAACATTTAATTGGGGTTGGCTTCCAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGTAACCAGGCAGGCATGGCGCAGGCAGAGCTGAGAGTTCTACATCTTCATCCAAAGGCTGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGTGAGGGTCTTATGCCCACACCCACAGTGACACAACTACTCCAACCACGTCACACCTATTCCAACAAGGCCACACCTCCAAATGGTGCTACTCCCTGGTCCAAGAATATACAAACCATACAGGGGGCCAAGATTAACATCTGTCTTATTTATGTAGACTGGCAGTCCTCCATAGGGAGTCCATGAGCAGTCCCAGGAAACATGGCCATCAGGGTATGACTTTCATATTTGAAACCTAAAATTGTACATTTGTCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAGTCCCAGGAAACATGG
59.96
TCCATCAGTGATGCAGGTGG
59.75
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGTCCATGAGCAGTCCCAG
59.82
TCCATCAGTGATGCAGGTGG
59.75
152
PCR template sequence:
AGACTGGCAGTCCTCCATAGGGAGTCCATGAGCAGTCCCAGGAAACATGGCCATCAGGGTATGACTTTCATATTTGAAACCTAAAATTGTACATTTGTCCGTACCTGATAACGGCTAAGACAATTTTCCTATTTGCACCCCCTTCCCCCCCCCCCACCTGCATCACTGATGGATTTTCGAGTAGATCGAGGGAAAGTGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(3), mmu-miR-466b-3p(3), mmu-miR-29a-3p(2), mmu-let-7a-5p(1), mmu-miR-19b-3p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-19a-3p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-10b-5p(1), mmu-miR-96-5p(1), mmu-miR-370-3p(1), mmu-miR-183-5p(1), mmu-miR-499-5p(1), mmu-miR-300-3p(1), mmu-miR-532-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTACATTTGTCCGTACCTGATAACG
siRNA sets
TATCAGGTACGGACAAATG,ATCAGGTACGGACAAATGT,TTATCAGGTACGGACAAAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.728236805
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page