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mmu_ciEml5_618
Basic information of circular RNA
PanCircBase ID:
mmu_ciEml5_618
mm39_Chr. Position ID:
chr12|98791019|98791637|-
Gene name:
Eml5
Transcript:
ENSMUST00000065716.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
26
Exon/intron offsets:
0
Genomic length:
618
Exon/intron sizes in nt:
618
Flanking exon/introns:
chr12:98791019-98791637
Splice length:
618
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATTTCATTTAAAAACGCTTTATCAAAAATACAGAAAAAGTAGCTTCACTGATTCAAACTACAGAAGTTAAAAATAGTAATCACGTTTGAACAATTGTGTTATTAGTGTTTTGGTCAGCTTTACAGCAAAATTGTTTTTGTGACTCATGACTGGCGTGCATTGATGACTTAGATACTTATCATCTGTAAAACAGCTAATCATATTTTAAATAAGTGCTATAAAAGCTTTTATATTATTGAACTTTATATTTTAAGATGATTTTGATTTTCTTAATGTGCCAGTAATATCAGTAATTATAAAAACGCAGAATGGATGAATAACTTAGCCATTCACACTTAACAGTTGAGGGTACATATTAATGTATGCGTACACTTATGTATATAGTACTTTTAGTAAAAATGAGATAATTAAACACATTTTTGTAGCTTGCAGTAATGTACAATTAGTGACAATTATTAGATACTATTACATATTAAATGTTATTCACATTAATTTTTCTAGTTGCATATTTAGTATGTATCTTTAACAATTTACCTTATATTGTTGGAAGAAGATGAATTTATAAGAATGTAATTGATCACCTTATCATTTAATAACATGTGTATCTTAATGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTTATATTGTTGGAAGAAGATGA
56.02
TCTGTAGTTTGAATCAGTGAAGCT
58.14
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTTATATTGTTGGAAGAAGATGA
56.02
TCTGTAGTTTGAATCAGTGAAGC
56.82
150
PCR template sequence:
GTATCTTTAACAATTTACCTTATATTGTTGGAAGAAGATGAATTTATAAGAATGTAATTGATCACCTTATCATTTAATAACATGTGTATCTTAATGACAGGTATTTCATTTAAAAACGCTTTATCAAAAATACAGAAAAAGTAGCTTCACTGATTCAAACTACAGAAGTTAAAAATAGTAATCACGTTTGAACAATTGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-340-5p(1), mmu-miR-466d-3p(1), mmu-miR-350-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCTTAATGACAGGTATTTCATTTAA
siRNA sets
TTAAATGAAATACCTGTCA, AAATACCTGTCATTAAGAT, GAAATACCTGTCATTAAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.915281723
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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