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mmu_ciEif3a_440
Basic information of circular RNA
PanCircBase ID:
mmu_ciEif3a_440
mm39_Chr. Position ID:
chr19|60761504|60761944|-
Gene name:
Eif3a
Transcript:
ENSMUST00000025955.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
11
Exon/intron offsets:
0
Genomic length:
440
Exon/intron sizes in nt:
440
Flanking exon/introns:
chr19:60761477-60761944
Splice length:
440
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGTGTGTCTTGAAGAGAGATGAGCTATAAAAGTTTTGAAGGACTTTATTATCTTTCACAATACGGTTAGAGATGAAATCTGCAGAAGGGATTTTATGATTTCCTGTTCGCTGGTTGTTGAGATGCTTCTGTCAAACAAGCCATGGAACTGCCTTTAAATATGTCTCATGGTTCTATAGTAATAATCGGCTGTGGCCCAGTTGTTGAGGTGATTGGGTTCTTGTTTAGTTATTATTGGTGAGCTCTGTTTATATTTTTTTTATTTGACAGAATACATTTGGTGCCAAGAACAATAAATGATGTCTTAGGTTGTGTCATTGTTAAAGACTGAAAGTACCACAGTAGTTTGTACTAGAACATTATCTAAATACATATTCATTGAAAGCCAGTGTTTCACAATTATTTTTACTATTGCTATCTAATACTGGGATATATGATCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCATTGAAAGCCAGTGTTTCACA
59.3
TCCCTTCTGCAGATTTCATCTCT
59.22
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAAGCCAGTGTTTCACAA
56
TCCCTTCTGCAGATTTCATCTCT
59.22
152
PCR template sequence:
AGTAGTTTGTACTAGAACATTATCTAAATACATATTCATTGAAAGCCAGTGTTTCACAATTATTTTTACTATTGCTATCTAATACTGGGATATATGATCAGTGTGTGTCTTGAAGAGAGATGAGCTATAAAAGTTTTGAAGGACTTTATTATCTTTCACAATACGGTTAGAGATGAAATCTGCAGAAGGGATTTTATGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-200b-3p(1), mmu-miR-196a-5p(1), mmu-miR-96-5p(1), mmu-miR-425-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGATATATGATCAGTGTGTGTCTTGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.877843313
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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