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mmu_ciEdrf1_2084
Basic information of circular RNA
PanCircBase ID:
mmu_ciEdrf1_2084
mm39_Chr. Position ID:
chr7|133256136|133258220|+
Gene name:
Edrf1
Transcript:
ENSMUST00000051169.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
2084
Exon/intron sizes in nt:
2084
Flanking exon/introns:
chr7:133256136-133258223
Splice length:
2084
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTGGTTGGTAAGCACTTAATGTCTTCAGTAGAGCAGCACACTCCCCTGTAGCCAGACAGGCTGTGTCAGGCACTTACTGGGAGGGATTGAGCAAAAGGGAAGCCATGGAGATGAAGAGTCAGGGATCCTTTCCTTGGAAGCTAATTTTGAGATTTTTCCTGGTGAGAACCTAAGGAACCTGCACCTCTGCTGGCAGCCTGGGGAAGCCACCAGGGTTTCAGGGAATCGCCGCCCTTGTGAAGTGTGCGGAGTCTTAAGAGCAAGAGAACCAGATCACTCCCTAGCCCTGAAGGACATGGCCTCTACTCAATTAAGCTGCTTTTTCTTTCTCACACTGGAGACATTGACAGCAGCTTCTTTAGAGGCTCTTAGAAGATGTAAAGGGTGGTCTGGTGAGATGTCTCAGTGGTTAATAACTGGCTGCTCTTCCAGAAGTCCTGAGTTCAATTCTCAGCAACTGCATGGTGACTGGTGACCATCTTTGAAGGATCTAAGGCCCTCTTCTAACAGATATAGCATGTAGACAGAGTACTCCTACATTTGAATAAGTATATAAAAGTTTTTAAAAGAAGAAGTAAAGGACTGATAGGATAATGTGCTTAGAGATGCGTACATTATGAGCACCTATCAGAGATGGCTGCTATTGTGCCATAGTTGAATAAGCTAGAAATAGTTATTGAAATTTCTAGAGGGTCCCTCTAGGTCACCTTTCAGAAAGACACTGTGGACTTGGAAATACAAATCTTGTTTCTTAATATGAATTATATGTCCCTTTCCATTTATACTCTGATAGTCAGTTCCAGTTTGAGTTTTTGTTGTTTTGTTTTTTTGAGATTTTACTCAATTTTTTACTTGATATGTTTAGATAGGTGGTTGTTTGGCTTACATGTCAGTTTACCACATGCATGCAGTGCCCACAGAGGCCAGAAGAGGACATCGAATCCTCTGCAACTGGAGTTACAGATGTGCGCCACCATTTGGGTGCTGGGAAGAGAACCCAGGCCTTTTGGAAGAGCAGTCACTGAGCCATCTTCTCCATCCCTCAGTTGTAGCTTTTTTGTTTTGTTTTAATGGTTTGAAAGTCTGTTTGTTGTTGTTTTGAGGTAATACACATGTAGAAATGATAGGGCAGATGGGCTAGATTTCTTTCTCTAGTACTTATGTGGTACTCCTTGTGTGCAAGGCTCGTTCTGCATTCAGAGAACTGCACCAGGACTTCACTGTTGCCTAGACTGTCTCTTCTTATCTCTCTTCCCTGTTGAAAAACCCTGCTCCAGTGTGGGCTTGGTGACTCCGTTGTAGTCCTGTCACTTGGGAGGCTGAGGCAGGATTGCTGCAAGTTCAGTGGTAGCTTGGGCTATAGAATGAAACTCGGGAAAAGGGAAGATGGGGCTGAGAGGTGGCTCAGTGGTTAAGAGCACTTGCTGCCCTCCCAGAGGACCCGGGTTCAATTCCCATCACCCATATGGCAGCTCAGAACTGTCTGCAACTTCAGTTCCAGGGAACTTGACACCTTCACAAAATAATTACCAGTGCAAACTTACCAGTGCAAAACTTAGTGAAGGAAGGAAGGAAGAAAAGGATCCCAGTCTCATTCATGTTCATGTTCTCTGTGCTGCTGTCCCATGTCAACAGACTTAATCCTCTTCTCTGTGTTAAACAGCTCTCAGTACACAGCTGTGAGCAAGACCTTCTCACGGTACCTCACATGCAGAGAATGTTTATGGCAATAGAAGAAGAGGATGCAGGCACAACCCAGGTCATAGTAACAAAGTGTCTTAGCATGTGACTAGAGAAGCTGGTCTGAGGTCTGGGGACAGGCTCTGTTTCACAGCGTATATACTGCTTGGTGGTGTGATGCAGAAATTATAGACAGCTGGCAGGTGTCACTTTCATGTTGAAAGTGATAGTGACTGACAGCGGGAAAACCGAAGACCTTAGAAGATGCCATGACACTGCTGCTTTCTTCTCCTGCCATAAGTTACCAATCTCAGCCTGCCAGTAGTACCTGAGTCAGGTTATTTTTTTATTTTCTGTTGAGATTTAAGTTCAGTCAACATGTGATGTTTTTCTGTGTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCTGCCAGTAGTACCTGA
59.96
ATCCCTCCCAGTAAGTGCCT
59.96
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCCTGCCAGTAGTACCTG
59.82
ATCCCTCCCAGTAAGTGCCT
59.96
180
PCR template sequence:
AGTTACCAATCTCAGCCTGCCAGTAGTACCTGAGTCAGGTTATTTTTTTATTTTCTGTTGAGATTTAAGTTCAGTCAACATGTGATGTTTTTCTGTGTTAGTAAGTTGGTTGGTAAGCACTTAATGTCTTCAGTAGAGCAGCACACTCCCCTGTAGCCAGACAGGCTGTGTCAGGCACTTACTGGGAGGGATTGAGCAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
19
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(2), mmu-miR-15b-5p(2), mmu-miR-298-5p(2), mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-16-5p(1), mmu-miR-135a-5p(1), mmu-miR-211-5p(1), mmu-miR-322-5p(1), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-96-5p(1), mmu-miR-467b-5p(1), mmu-miR-183-5p(1), mmu-miR-680(1), mmu-miR-673-5p(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTCTGTGTTAGTAAGTTGGTTGG
siRNA sets
CAACCAACTTACTAACACA, AACCAACTTACTAACACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.748478528
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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