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mmu_ciEaf1_1982
Basic information of circular RNA
PanCircBase ID:
mmu_ciEaf1_1982
mm39_Chr. Position ID:
chr14|31222213|31224195|+
Gene name:
Eaf1
Transcript:
ENSMUST00000022446.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
1982
Exon/intron sizes in nt:
1982
Flanking exon/introns:
chr14:31222213-31224219
Splice length:
1982
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGGCCAACCTCCGCGTTCTCCCTTCCTCTTGTACTGTAGGGATTGAAACCGGGGTCTCCTGTGCTGGCAGGTGCCCGTTCTCCTAAAGAATAGCCTTAAGTGTTTCGAAATCTTTATGGCATTCAGTCCAGTTTTATAAGAGTGTGAACATCTCCTTGCTCATTAGTGTTCAATCAGTAATATTAGCCACTCCTGTCTCAGATACATCAATAATAAAATGTACATTTTTTTCAAATACAGTAAAAAGAAATAATGCTTTTGAAAGCTAAAACATGAAGCCTTTGGGGAGAACAGGGTATTTATAATTGAGCCAATTTTGTCAGACTCATAACTGCTCTTATACTATCAAGTAGGGGATTCAGTTTATATGTATAGACTGAAAAATACAAAATAATAATTGCATGACCTTATTAAATTACTGCTTGTAAATTAGGATATATTTGATGTGCCTATACTATCAAAATGAAACGTCGTCTACTATGTATGGTGGGTCCTACTGTAAGTGCAGTACTGGAGAGTTGGCGCACCAGGATCAAGAGTTCAAGGCCCTCTACAGCTGCAGAGTGACTTTGAAGCTGGTCTGAATTGCAGGAGACCCTGTGTCAAAACAAAAACAAATAACAGTGGTCTTGCAAGATTGCTAAGTGAATAAAGGCGTTTGCCACCAAGTCTAATGACTTGAGTTCAGTCTTCAGGACTCACGTGGTAGAAGACCTAGCATAAATACAACTATAATTTTAAAAACTTAAAAACAATAACCAAAAAAAAACCTTTCCTACTTTTAAAATAGTGAACTTTTGGGTTCATTCAATATTAGAGTTTATTTGAAAGTCAATATATTCTATAACTGGAATACAATAATTATTGTAAGATAATGATTAAGGTTTTTGTCGGGGAGGGCACTAGGCATCAAATGCAGAGAGAGAGCTTTGCACATGATAGGCGAGTGCCCTCACCACTGAGCAAAATCACAAGTCCACTAAAGAGAGGGGGTTTTCTTCATTAAAATATATATATATATGTGTGTGTGTGTGTGTGTGTATATTTTTTTTTTACATCCCAGTCACAGTTCCCCTCCCTCCTCTCCTCTCAGTCCTCCCCTCCCCCTCCTTCTCACAGAACACTAATTAGATTTTAAGAGACTATTGCAGCTTGATGTCTGTTTCTGTTTTTCTTTCCCTCATTTCTCTAGAAAAGGAAACAGCCCCCATTTATTGAGATTATCGTGGGCCAGTATGTTTTAGGTGTAACACACCTAATCTTTTCCAGTAGTCGTAGAAAAGTGCTATTCTTTTGGAGACTGGGGGTTACAGAAGTTGTGATTTATCTAATTTGACTTCGAGATCTAAGCCCTCACCTCAGGCGAAGTGCCCATGGTACCCCTTTCTGTCCTTTCCTTTGTTGGTTTGTATCAAGGTCTGTTTTAAATGTGCTACTCCTGGAATACCCATTGGTGCTCCGTCCTCTATCTACTCTGTGATTGGGGACTATCACCATACCTCTAGGGTATTTGTTGTGCTCACAGAATCTCAAGACTTACTAGGTCAGACCTGCAGAGACGTCTAGGGAATTTGTGTAGATGCTTAGCTAAGAAACATTAGGCTAATTCATAATCCAGTTTATCCAGAAACTTGTATATTTATTATTACAACTTTATATTGAATTTAAGTCTGTAAAAATGCTTGATCACATTGTTTTATCTCCTTGCTGAGCTTAGATGTGGCACATCTGAAATCTTAGCTCTTGGAAGGCTGCAGCTAAAGGATCTTGAATTCTAGGGTGAGCGCCTTGCAAGCAGAGTCATTTCACCAACTCTGCATCACTGATGCATAGTTCAGTTCTGGGATGCAGTAGACATATGGACATTGAGTGCATTCTTGTGGTGAAATTAAACAATTAGATTTTCAGTCACCTGGAAAGAACATTGGTTCTGCAAACGCTGCCTGTGTGCTTGGTCATCCTGAGCAATACTGCTTTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACATTGGTTCTGCAAACGCT
58.97
TTCTTTAGGAGAACGGGCACC
60
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATTGGTTCTGCAAACGCTG
60.27
TTCTTTAGGAGAACGGGCACC
60
151
PCR template sequence:
GTGGTGAAATTAAACAATTAGATTTTCAGTCACCTGGAAAGAACATTGGTTCTGCAAACGCTGCCTGTGTGCTTGGTCATCCTGAGCAATACTGCTTTGCGTATGGCCAACCTCCGCGTTCTCCCTTCCTCTTGTACTGTAGGGATTGAAACCGGGGTCTCCTGTGCTGGCAGGTGCCCGTTCTCCTAAAGAATAGCCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-29b-3p(1), mmu-miR-217-5p(1), mmu-miR-184-3p(1), mmu-miR-143-3p(1), mmu-miR-185-5p(1), mmu-miR-139-5p(1), mmu-miR-382-5p(1), mmu-miR-215-5p(1), mmu-miR-340-5p(1), mmu-miR-466d-3p(1), mmu-miR-224-5p(1), mmu-miR-27a-5p(1), mmu-miR-680(1), mmu-miR-3470b(1), mmu-miR-466b-3p(1), mmu-miR-193b-3p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AATACTGCTTTGCGTATGGCCAACCT
siRNA sets
GGTTGGCCATACGCAAAGC, TTGGCCATACGCAAAGCAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.855220887
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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