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mmu_ciDzip3_3086
Basic information of circular RNA
PanCircBase ID:
mmu_ciDzip3_3086
mm39_Chr. Position ID:
chr16|48792699|48795785|-
Gene name:
Dzip3
Transcript:
ENSMUST00000121869.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
3086
Exon/intron sizes in nt:
3086
Flanking exon/introns:
chr16:48792699-48795785
Splice length:
3086
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCATTTTGTTTATAGGTACATCTTCACTTATAACTTTCAGTACTGTAAAATGGGAATCTGCTTTGCGCAGAATGTAATTGATCATAACATTTGTGGTCCGGGAGTGTTCCTTTCTTCTTTCTAATTTCTGGTAGTTAATCATGCACTTGGAACTTAACAGACCATGGCAGTGTGAGGCACCCAGCATTGACATTAGTAGTATCAGCAATGAATCTGACAGACCTGGATTCAAATACAGTTTTCTACCACTTACCATAAGAAACAGTTTGTTAAGCTTAATTTTCTACTATCTAAAATGGAACAAGTTTAGTATCTACATCATAAAAATATACATAAAATACTACAGGGCAAATAATAGTGCCTGGTGTACAAAACAGTAACAGTACATGATAAATGATGATTGTAGTTACTGACAGCCTCACCACTGAGGATTTTAAGCATAAGTGGCCTGTAGTCTGAGCAGTATAGAGGCAGAGGTAGTGGGATCATGAGTTCAAGATCAGCCTCAACCATAGTTAGACTTTTTCCTAAGAACTAAAAGACAACAAATAAAAACAAGCAAGCTGAAAGGTCCAAGTAATGGCTGTAAGAATCCTAAATGTTACATATTTTAGGAAGCTAAAATTATACAGAATAACCTATGTAGTCTTTGTTCACTTCCTTTGTGAATATTTGTAGCTTTTATAGCATCAATCATTTGTTATATTTATCTTAAGCATCTAATCGTAGTCCAAGGATTATTGTGCTGGATCCCAGGAATAAAATAATTTGCAAAGCAAGACAGTTGTCCTCAGAATTAAAAGTATTGTGAAGGATATAGATTTTAATATAATTATTGAAAATACTCACTTAATGAAAAATAAAACATGTTGAAGAGCTATAGAGGAAAGTACAGTGAATAATCCAAGTTTTTTATTGGTATTGCAAAATCAACAAAATTCTGAGGATATAATTGTTGGCTGGGATATCATGTAGAAAGTAGTTTTTATTCTATTTAGGGTTTAGTTCCTATCCTCTAGTATGACTCTCTTGTACTAGGGAATCAGGGACTTCCCACTTCCTGTTCACTGAGTCTGGTTAGAATGGCACTCAGTGTACCAGCTTCAGTATCATGCTTTGTGGAATGTAAAGATCAAAATGTAAAGATGGTTCTCTGACAGCGTCAGATACTTAACATAACCCAAATCAACACAAAGATTTATATTGTTACCTTCCCTCAGAAAGGCAAACTACTTTTTCTTCTGCCTTGATTAGAGTTGAAAAGAATCTATTCTCTAGATCACTAAAAAGCCATTTAATGTCAAAATCATTACTTTTTATTTTTAAGTTGTTTTTCTGTATCAAGTGTGGTTTGTCTTTGAAAATGGTAGGTTACAGAGATTTGGGTTACAGTATTGAATTTCTAGATTATATAAATAAACTTACCAAAAATAATAATATTTTATACAACTAATCTTGGAATAAATTAGAAATAAACAAGAATAAATGTTGGTTGAATAGCAGAAACAGTAGACGGTGAAAGCTTGAGTAGAAGGAACATGACTATGGGTTCTTCCCTGGACCATAAAGGACATCATTTAGCTTATCCAAGTCATTGATGCCCTTTGTAGTTCCTTTCTTTTTTTTTTTTTTTTTTAATTATTTATACAGCATTCTGCCTGCATGTATTCTGCCTGCATGTATGTCCAGCAGAGGGCTCCACATCTCATTATAAATGACTGTGAGCCACCATGTAGTTGCTGGGAATTGAATTCAAGATTTCTGGAAGAGCAGCCAGTGTTTTTACCCACTGAGCCATCTCTCCAGCCCTACTTTGTATTTCTTACAGCATTCATCAGTATCTCTTCCAGGAACATTGCTATGACCTGCACATGCTCTTTGTTTTTACATAGCAGCCAGGCTTTGTACCTCTTATTATTGGCCATAATTGTATCAAATTTTTAGAAGCATGTTGGCTTCAAGTGTCCCTGCAAGAGTAGTGAATGTTGATGTCTCTGTGACTTGTCCTGTATCACTATCCATTTCTTCATCCAGCCTTGTATTTGCCCCTTCGTTTCACGGCCTTAGGATTTACTCCCATGTTTCTTCTTTCTTGTCAGTCATAGTGTGCATTTTTTAGGTGAATGTGGTTTTCTTCTTCTTCCTAAACTTAGACTTTGTTTTCTGTCTTGAGCCATTATGCCTGACCCTAGATGTCCTGGGCCCAAGGGCAGTAAGTGGAGAGAGAGAAAAATGATCTAAAGAAGATGACTATCTTCTTTTGGAATGTGAATCTCTGATGATAATTTTTCATGATCTCTAAGAGAGGCCATTGTCCTCTAGCAAGGAAGAAAAACCTTGCTTGTCAAATTTTGATTTCTGAGCACATTCATAGACATAGCCTCATTTCAGATCTCTGTCTACTTATCAGAACCCTGATTGTAGCAAGTAGTCCCACTGAGACTGGGCCTCAGGTTCCATTACAATTGTTTTACTTTTTAATCACAAAATTCTGGCCTCACGTTTGGCATAATATGCTGTTAGAATGCTTTAAATTTACCATAGCATACTATCCCTCTAGCTTTTACTACTACTACTGACTACTACAACTCAGGACTGTCCTGAGTTGATAATAGCCTGCCAAGGCTGTGCATTTGTTCTCATTTACAGTTTGTCCTATCTTATAATTAAATTTGGCCCTTATTTTCAGCATAGATTGAGTATAGGAGATGAGAATCAATTTAAATGCTGCCTTAGAGGCCTTATGGCTTTCAAAGTGCATGCTAAATTAATAATTGGCTGACCTATACCTGTCATTCTCTTTCTTCAAGGCCTCCAAGACAGTTAACAAAAGCCAACCAACTCTACAACCCCTTTAATTACCATGGCCCCCATACTGTTCAAGCTTGAGCTACTACATAACCTAGTGCCTCCCCTTCTACCTGTATTTCATCCCAGTCTACCACAGGTGAGAGTCCTAGTATTTGTATTTCTACAGCATGCCAGAGGTTATCACCACATTCCTTTGGTTTCTTTCCTCTTTGATAAACTCTATAGTACCAAAGTCTAGTTCATACTAACCTTACTTTAAACTTCCTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCACCACATTCCTTTGGTTTCT
58.09
CGCAAAGCAGATTCCCATTT
57.34
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCACATTCCTTTGGTTTCTTTCC
59.9
CGCAAAGCAGATTCCCATTT
57.34
160
PCR template sequence:
CAGAGGTTATCACCACATTCCTTTGGTTTCTTTCCTCTTTGATAAACTCTATAGTACCAAAGTCTAGTTCATACTAACCTTACTTTAAACTTCCTTGCAGGTAAGCATTTTGTTTATAGGTACATCTTCACTTATAACTTTCAGTACTGTAAAATGGGAATCTGCTTTGCGCAGAATGTAATTGATCATAACATTTGTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(2), mmu-miR-23a-3p(2), mmu-miR-24-3p(2), mmu-miR-9-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-181a-5p(1), mmu-miR-135a-5p(1), mmu-miR-101a-3p(1), mmu-miR-101b-3p(1), mmu-miR-181b-5p(1), mmu-miR-433-3p(1), mmu-miR-362-5p(1), mmu-miR-802-5p(1), mmu-miR-410-3p(1), mmu-miR-344d-3p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-3065-5p(1), mmu-miR-296-3p(1), mmu-miR-181d-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AACTTCCTTGCAGGTAAGCATTTTGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.890670552
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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