top of page
mmu_ciDzip3_1351
Basic information of circular RNA
PanCircBase ID:
mmu_ciDzip3_1351
mm39_Chr. Position ID:
chr16|48780119|48781470|-
Gene name:
Dzip3
Transcript:
ENSMUST00000121869.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
1351
Exon/intron sizes in nt:
1351
Flanking exon/introns:
chr16:48780119-48781470
Splice length:
1351
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATTGTAATTATTAATCATTTGATTATTAACATTATTGACAATCAGTTATCCTCTTTAAATTTTATAAAATTAAACAGTTAAAATTGTTCTATTATTATTATATCAAAATTCTAGATAGGGTATAGTATTTGGCTTTGTGGCAGAGCTCTGCTGAGGTAAATGTAGGTTCCTGAATTTTGTCCCAGCCCTGGGGGGGGAAAAAAAACAGTGTTTACTTTAATTGTGATGGTTATATAGTTAAAAAGTAGATTGCCTCTGAGAATATCCATTCACAATCAATACTAACATAATCTCTGAGTCAGTAGAATAGGTTGGTTCTGTAATGTTCATCTGCCTCTGGTTTTGATTATTTGCCCTGTACTCATACAGTAAAATAGTCTATTCTCTATTATTGACCAGTTGTGGATTTCTGAAATAATCTGTTGCAAAGAAACTTCTCTGATGAGGACTGAGAGCTACACTATCTGTGGGAATAAGGATAAAAATTTAAGACTGCAATTAGATATTATATTGGTCATACAGTAGAAAATGGCAATAGTTGGTTCTCCTTTGGGTAAAATTACAGCAAAGGAGTTGGAAAGTTTGTAAGAGTCAGAAGCCCAGAGCTCTTGGTACTATATGAAAGGAAAAATCCACCCTTGAAATAATAATGTATGGTTGCCTAATCACAACTGGCATAGTGAACAGCAGTTGATCTACCAGTGCAAATGGAAATTTCACATAGTCCCATCCTAAGATGAATAGCACCTGTAGTCAATGCCTGCTGAAAAAGCGAGGATCCATCTTAGGAGCAGCTCCAGTGTAGTCTGTCCAGGCCTGAGGTAGTTAGCCCAGGGCACAGGCATAGACTTGAAGCACTGAATTACAGGTGTGCATATATGTGTGCATATATACATATAAATTCATATGTATGTGTAATAATAAGTAAAAGATAAATTTGGGAAATAGAAGGGATCCAAGACCAATGTAGATGCAGTGCTTTAGTATGAAGTCCTCAAAACGCAAGATTATAATTTCCACTTTGTAATGAGAAATGGTAGAAATTGAGAATAGTGTCATACATATTAAGAAGTGGGCAATTCTCAGGGCTCATGTTACTATCTAAATGATCACTCTCGTTGTGAGTCTTTGGTTGAGAGAAAAAGGTAACGGTAGAAATGTGAGCAGTTTGATCTTGTGATCTTATTTTTCTAACTTCAGTAATTCTGCAATATCAGAAGTTCATTTGGTTTCTATAGGCTTTGCTAGGAAATTTTGAATGTTGTGTTAAAAAGAATACTCTATAAATTAGCAGATAAGAAAAGATATTTCTTTTTTTACCTGAACTATATCTCTTTTTTTCCCTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAATGTTGTGTTAAAAAGAATACTCT
56.25
AGAGGATAACTGATTGTCAATAATGT
56.49
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAATGTTGTGTTAAAAAGAATACTC
55.03
AGAGGATAACTGATTGTCAATAATGT
56.49
150
PCR template sequence:
AAATTTTGAATGTTGTGTTAAAAAGAATACTCTATAAATTAGCAGATAAGAAAAGATATTTCTTTTTTTACCTGAACTATATCTCTTTTTTTCCCTCAAGGTATTGTAATTATTAATCATTTGATTATTAACATTATTGACAATCAGTTATCCTCTTTAAATTTTATAAAATTAAACAGTTAAAATTGTTCTATTATTAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-181a-5p(1), mmu-miR-326-3p(1), mmu-miR-125b-5p(1), mmu-miR-214-3p(1), mmu-miR-351-5p(1), mmu-miR-425-5p(1), mmu-miR-297a-5p(1), mmu-miR-466d-3p(1), mmu-miR-344d-3p(1), mmu-miR-188-3p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTCCCTCAAGGTATTGTAATTAT
siRNA sets
AATTACAATACCTTGAGGG, ATAATTACAATACCTTGAG, TAATTACAATACCTTGAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.857682863
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page