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mmu_ciDynlt3_269
Basic information of circular RNA
PanCircBase ID:
mmu_ciDynlt3_269
mm39_Chr. Position ID:
chrX|9522349|9522618|-
Gene name:
Dynlt3
Transcript:
ENSMUST00000033519.3
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
269
Exon/intron sizes in nt:
269
Flanking exon/introns:
chrX:9522302-9522618
Splice length:
269
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGGGCCTCAAATGAATTTATCCAGATTCAAAGTTCTAGCAAAGTCAGGCTGGAGTTATTACCGTAGCACTACTTAAAGTCTGAAAAGATGGTATCAATAGAATTGCTTTCTATCTATTCACAAGTATGATTTCAGCCCAGTATAAAATGTGAAGATGCAATGAGTTGTAGAAAATACTACTAAAAGCTGCAAGTGTATGTGCATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTTAGTGTTTGGTAATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAGCTGCAAGTGTATGTGC
57.29
AACTCCAGCCTGACTTTGCT
59.52
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAAAGCTGCAAGTGTATGTGC
57.98
AACTCCAGCCTGACTTTGCT
59.52
144
PCR template sequence:
TGTAGAAAATACTACTAAAAGCTGCAAGTGTATGTGCATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTTAGTGTTTGGTAATTGTGAGGGGCCTCAAATGAATTTATCCAGATTCAAAGTTCTAGCAAAGTCAGGCTGGAGTTATTACCGTAGCACTACTTAAAGTCTGAAAAGATGGTATCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-466b-3p(2)
siRNAs for circular RNA silencing
Junction sequence
GTGTTTGGTAATTGTGAGGGGCCTCA
siRNA sets
AGGCCCCTCACAATTACCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.751401191
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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