top of page
mmu_ciDnm2_731
Basic information of circular RNA
PanCircBase ID:
mmu_ciDnm2_731
mm39_Chr. Position ID:
chr9|21401090|21401821|+
Gene name:
Dnm2
Transcript:
ENSMUST00000165766.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
13
Exon/intron offsets:
0
Genomic length:
731
Exon/intron sizes in nt:
731
Flanking exon/introns:
chr9:21401090-21401953
Splice length:
731
Other database IDs:
circAtlas: mmu-Dnm2_0019
Human Ortholog IDs:
Mature spliced Sequence:
GTAGCTCCCCAGTCTCTGCTGTCACTCCCTTCTGAAGACAGGAGCATACTTAGCTCATCATAGCATTTGATATGGGAACCGACTCCTTAGTACTAGGCTGCTCTGTCAGCTTCTGGGTCATGTAGCTGTTAGAACTAAGGCTTCCACAGGACCTTGGGGCAAATTGCAAACACCCAAAGGCCTCATCTGACATCTAATGTGAAAGTTACAACTTGACCCTCAAAGCAGGAGATGTGTTACAGTGACCCCGAGGTGTATGTTTTCTAACTCTTGGCCCCAGGAATGAAGGCAGGTAGGTAGAAACCATGGAAAGTGCCACAGGCAACTCAGGGAAGATGGGGATGGTTTGAATGCCACGGCTGGAGAACCCCAGGCCTCCTTTATAATCCCACCCCAGCTTCAGAGGCTTCGCATACTTACAGATGGCTTCAGAGATGCCAGTATTACGTGTCTGGTTGGGCTTGTTTTTCTGTCCAGTTTCTGCACTGTCCCCCAATTCCCTTCCCATGTCAGACTGGGGTGGGGATGGGGCGCTGTGCTGTTTTATCTTGCACGATTTAGAGCCAGATGGGGAGAAATGTAACAAATGCATGATTTTGAGTTTTCTTTTTGTATGTGTGCTTGCCATAGGTAGTACATATGTTGTTGCTTTTTTTTGTTTTGATGAAGATAATGAATTAAATATTAACACCATGAATATAATTAATAGCATGTAATTTTTTTCTTTTGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACACCATGAATATAATTAATAGCATGT
55.61
AGCCTAGTACTAAGGAGTCGGT
59.49
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACACCATGAATATAATTAATAGCATGT
55.61
CAGCCTAGTACTAAGGAGTCGG
59.12
144
PCR template sequence:
TAGTACATATGTTGTTGCTTTTTTTTGTTTTGATGAAGATAATGAATTAAATATTAACACCATGAATATAATTAATAGCATGTAATTTTTTTCTTTTGCTGTAGCTCCCCAGTCTCTGCTGTCACTCCCTTCTGAAGACAGGAGCATACTTAGCTCATCATAGCATTTGATATGGGAACCGACTCCTTAGTACTAGGCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-205-5p(1), mmu-miR-351-5p(1), mmu-miR-130b-3p(1), mmu-miR-192-5p(1), mmu-miR-215-5p(1), mmu-miR-680(1), mmu-miR-29b-2-5p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTCTTTTGCTGTAGCTCCCCAGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.737946846
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page