top of page
mmu_ciDmrtc1a_836
Basic information of circular RNA
PanCircBase ID:
mmu_ciDmrtc1a_836
mm39_Chr. Position ID:
chrX|101947519|101948355|-
Gene name:
Dmrtc1a
Transcript:
ENSMUST00000119624.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
836
Exon/intron sizes in nt:
836
Flanking exon/introns:
chrX:101947369-101948355
Splice length:
836
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTAGGGATATTTGAGAGGTGAGAGCTTTCAGTAGTTGGGAATCCAGTGTTGGTGGTTTTAACCAGCTCAGAACCAAACACTCAAGTTCCTAAGGCTGAGTGGAGAGAAGGTGTCTCAGAGCCACTAGGTGAATCTTCAGGTTACTACATGCTTTGTTCACTAACAAATGGCTAGTGTCCTGACATCAAGAAACAGGTAGACTGATGTCCCCGAAATAGCAAAGTCTTACTTCAGGGGAGGCAGTATATCAAGCAGAAGGATTAGAACTATGTGTAATGGTTCCCAATGCATGATTGTGGTTGTATTCCAGACCACTGTAGACTGAGGAGGACTAAAATGACAAGCGCAGGGGATAAGGGTCTGAAATGGATGCTGACTTAGTGCATCCTCATGGAGGTACTGAGCCTGGGCAGTCTTATCAAGTTAAATGTGACCAGTGAGTTTCAATGACTCCCTCAAACATGAAGGGCTTCATGAGTTCAGAGGAGTGTTACATGGCTGGGGAGTCTGAGATAAGAGGCTGTGCACTGGTGAGACAAAAATATCAATCTGACATGTGAGTGGGAAGCCACTCTGTGTATGCTTGAAGAAAAAAGACAATTAAGGAAGCTGGAGAGATTAATTGTCACTGAGGTCTAGCAAGGAGTTTAATGTAGGGTGGACCAGCAAACCTGTGGGGTGAGGAGATTCCTCAACTCAATAAGGATTATATCTAGAGACCCCGGGTTTGACCAAAAGGGATTACTGGCTGTGACTGAGAGATGGTAGAGCTAAGAACAGAGATAAGGGATTATGATGGGATGGGTGTATTCCTGGTCTTACTGAAAAAAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGTGACTGAGAGATGG
59.1
CCACCAACACTGGATTCCCA
59.89
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGTGACTGAGAGATGG
59.1
ACCACCAACACTGGATTCCC
59.89
147
PCR template sequence:
CAAAAGGGATTACTGGCTGTGACTGAGAGATGGTAGAGCTAAGAACAGAGATAAGGGATTATGATGGGATGGGTGTATTCCTGGTCTTACTGAAAAAAATGTATGTAGGGATATTTGAGAGGTGAGAGCTTTCAGTAGTTGGGAATCCAGTGTTGGTGGTTTTAACCAGCTCAGAACCAAACACTCAAGTTCCTAAGGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(1), mmu-miR-205-5p(1), mmu-miR-211-5p(1), mmu-miR-326-3p(1), mmu-miR-24-3p(1), mmu-miR-411-3p(1), mmu-miR-802-5p(1), mmu-miR-673-5p(1), mmu-miR-3087-3p(1), mmu-miR-484(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TACTGAAAAAAATGTATGTAGGGATA
siRNA sets
CTACATACATTTTTTTCAG, TACATACATTTTTTTCAGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIDMRTC1A_836_ORF_3
0.9062
-0.174230151
0.026171707
96
ORF sequence:
ATGGTAGAGCTAAGAACAGAGATAAGGGATTATGATGGGATGGGTGTATTCCTGGTCTTACTGAAAAAAATGTATGTAGGGATATTTGAGAGGTGA
Peptide sequence:
MVELRTEIRDYDGMGVFLVLLKKMYVGIFER
IRESfinder result
IRESfinder score
0.556201781
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page