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mmu_ciDlg3_752
Basic information of circular RNA
PanCircBase ID:
mmu_ciDlg3_752
mm39_Chr. Position ID:
chrX|99850861|99851613|+
Gene name:
Dlg3
Transcript:
ENSMUST00000000901.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
12
Exon/intron offsets:
0
Genomic length:
752
Exon/intron sizes in nt:
752
Flanking exon/introns:
chrX:99850861-99853467
Splice length:
752
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGGGGACCCCCACCCTCCCAAGGCAGTCAGCCAGAATGTAAAGAAGGGTGAGAGAGAGGCTTGGAGTTTGGGTTGAAATACAGGAGAACTGGGAAGCATGAAAGGCTGTCTGCTATTCAAGGGCTGGCTCTGTCCTGCTAGGAAATTGCCTGCTTTTTTAGCAAGCTGCAGGAGCCCTGAAAGCCCACAGTTGGGTGCTATTGGGTGACTGGCTCCGGAAGGGGTGGAGCTGGCTGACTTGGTGGGGAAGATGAAACCACTCGTGGTTGTCTTCTGGCAGCAGAGCCTGCCAGAGCTGTGGACACCCTGATCAGAACCTGTTGTTCCCATACCATCTTGCCAAGAAGGCCATCCCCAGAGCAGCCGCTTGCCTTCAGACAGCATGGGACACGGGGATGTGACCAACACACAGTTTCGTTTATAAGCTTTGCAGCCAAGGCCAAAGAACTTGAGGAGCAGTAGAGGGAAGAGAGGCATGGAGTAGATGACTGTATCAGTGGCACCTTAGGGCTGTGTCTAGGAGGCAACAATGACCTTTACTCTGTAGGAAGGTCAGCGAGTGATGCTGGACTCAGTAGAGCATCTAACATCTCTACATTTTCCTGTTAAACATAATTTTCCTCTTAACATCAACTTTCATTTAATCTCATAGACTCCATTTGTGAAAGCTGGTCTTTTATTTAGCTCATCATTGTCTCCATTTTAGTTTTTCTTGCATGCTTTAAAATCCATTGTTGTTGTTTTTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCCATTTGTGAAAGCTGGTC
59.11
ACCCAAACTCCAAGCCTCTC
59.6
173
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACTCCATTTGTGAAAGCTGGT
59.11
ACCCAAACTCCAAGCCTCTC
59.6
174
PCR template sequence:
CATAGACTCCATTTGTGAAAGCTGGTCTTTTATTTAGCTCATCATTGTCTCCATTTTAGTTTTTCTTGCATGCTTTAAAATCCATTGTTGTTGTTTTTTTGTAAGTGGGGACCCCCACCCTCCCAAGGCAGTCAGCCAGAATGTAAAGAAGGGTGAGAGAGAGGCTTGGAGTTTGGGTTGAAATACAGGAGAACTGGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-140-5p(1), mmu-miR-31-5p(1), mmu-miR-18a-5p(1), mmu-miR-182-5p(1), mmu-miR-300-3p(1), mmu-miR-673-5p(1), mmu-miR-1199-5p(1), mmu-miR-544-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGTTGTTTTTTTGTAAGTGGGGACC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.705982307
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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