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mmu_ciDlg3_395
Basic information of circular RNA
PanCircBase ID:
mmu_ciDlg3_395
mm39_Chr. Position ID:
chrX|99857982|99858377|+
Gene name:
Dlg3
Transcript:
ENSMUST00000000901.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
395
Exon/intron sizes in nt:
395
Flanking exon/introns:
chrX:99857982-99858398
Splice length:
395
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCAAAGAGGAAGTGGCCTGGCTACCCTTGAGGGAAGGCCCTCATAGACATAGCAAAGAGCTTCACTAATCTGTAAGGTAGTACTTTAAAAAAATACTTATTTTTATTTCATGTGCTTTGGTATTTTTCCTGTATGTATGATGGTATTTGAGCGTTGTATCCCCTGGAATCGGAGTTACAGACAGTTGTTCACTGCCATGTGGGTACTGGGGATTGAGCAGCCAGTCCTCTTAACCTCTGAGCCTCAACCAGATCTTTTTAACAGTCATAAGGAACCGTCACAGAAACAAGAAACTTCCAGGAACTTTTGGGGGCCTCGAGGATGTACGGGCCTGGGGTCTTCCCAGGCTGCTGGATTTCTTGGGGACCTGCAGCCAGGGACTCGATGAGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCAGGAACTTTTGGGGGC
60.47
GCTATGTCTATGAGGGCCTTCC
60.03
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCAGGAACTTTTGGGGGC
60.47
TGCTATGTCTATGAGGGCCT
57.59
155
PCR template sequence:
AACTTCCAGGAACTTTTGGGGGCCTCGAGGATGTACGGGCCTGGGGTCTTCCCAGGCTGCTGGATTTCTTGGGGACCTGCAGCCAGGGACTCGATGAGCTGTAAGCAAAGAGGAAGTGGCCTGGCTACCCTTGAGGGAAGGCCCTCATAGACATAGCAAAGAGCTTCACTAATCTGTAAGGTAGTACTTTAAAAAAATAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-17-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-24-3p(1), mmu-miR-34b-5p(1), mmu-miR-466d-3p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACTCGATGAGCTGTAAGCAAAGAGG
siRNA sets
TTTGCTTACAGCTCATCGA,TTGCTTACAGCTCATCGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIDLG3_395_ORF_3
0.6583
-0.10164041
0.026935625
120
ORF sequence:
ATGTACGGGCCTGGGGTCTTCCCAGGCTGCTGGATTTCTTGGGGACCTGCAGCCAGGGACTCGATGAGCTGTAAGCAAAGAGGAAGTGGCCTGGCTACCCTTGAGGGAAGGCCCTCATAG
Peptide sequence:
MYGPGVFPGCWISWGPAARDSMSCKQRGSGLATLEGRPS
IRESfinder result
IRESfinder score
0.804642681
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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