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mmu_ciDennd5a_535
Basic information of circular RNA
PanCircBase ID:
mmu_ciDennd5a_535
mm39_Chr. Position ID:
chr7|109495618|109496153|-
Gene name:
Dennd5a
Transcript:
ENSMUST00000106722.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
20
Exon/intron offsets:
0
Genomic length:
535
Exon/intron sizes in nt:
535
Flanking exon/introns:
chr7:109495618-109496153
Splice length:
535
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGCTGGTCTAGGTTTGAAGAGTAGGAAAAGTATGTTGATATGGAGGTCTTTATATTCCATGTCATATGGGTTAGCTGTAGAAGCCAAATCAGGCAGCCCTTAGTTAGGTCTGCTATTTGTTTGCCCAGATTTTTTTGTAGGGAATAATGGGAGAGCACACCAACCCCATGCTCATGGGTATGACCCCTTAGCTCTGAAAACTTGGACCAAAAGAGTTTCTGAGCATCTCTCATCTAGAATAGGCTTAGCCCCAATTCCTCACCCTCTATTCCTATAGAACCAAAACAACAGTTGAGAGTATTGGATCCCAAACCCTGTGTGGAGAATTTTTATGCAGGAGACAGTCCTCAGAGTTTTCTTGTCCTTTCAGACAAGTGGAAAAGAGCATGCTCATGCTAAGGGCTACATAAATAAAATCTAAAACTTGCTTTGGTCTCCTGAAGTTGCTTGTGTGGGCTTGGAGAGTCCACAGCCCCTGGCCTGCAGGGCAGAGTTTGAGGAGCCATTGTCACAGCTTTTCTTCTCTTCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGAAGTTGCTTGTGTGGGC
59.97
ACAGCTAACCCATATGACATGGA
59.28
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGTGTGGGCTTGGAGAGTC
59.89
ACAGCTAACCCATATGACATGGA
59.28
166
PCR template sequence:
GTCTCCTGAAGTTGCTTGTGTGGGCTTGGAGAGTCCACAGCCCCTGGCCTGCAGGGCAGAGTTTGAGGAGCCATTGTCACAGCTTTTCTTCTCTTCACAGGTGAGCTGGTCTAGGTTTGAAGAGTAGGAAAAGTATGTTGATATGGAGGTCTTTATATTCCATGTCATATGGGTTAGCTGTAGAAGCCAAATCAGGCAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-1a-3p(1), mmu-miR-377-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCTCTTCACAGGTGAGCTGGTCTA
siRNA sets
TAGACCAGCTCACCTGTGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.774716162
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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