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mmu_ciCul5_690
Basic information of circular RNA
PanCircBase ID:
mmu_ciCul5_690
mm39_Chr. Position ID:
chr9|53534244|53534934|-
Gene name:
Cul5
Transcript:
ENSMUST00000166367.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
690
Exon/intron sizes in nt:
690
Flanking exon/introns:
chr9:53534243-53534934
Splice length:
690
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTAGATGGGCTGTCAGTTTGGGTGTTAGTAGAAAGTGTTACTTAAGAGCTGGAGAGATGTTTCCGTGGTTACGAACTCTGCTTTTCCAGAAGATCTGGATTCAATTCCAGGCAACCACATAGCAGCTCACATATTCATAACTTCAATCCCAAATAGATTTGATGCCCTCTTCTGGCCTCTATAGGCATTTGTGGTGCATAGGCATTTATGCAAACAAAACACCCACACATGTAAAATAAAGTAAAAACAAAACAAAAAGCTAAGAACAAGAACAGTGGCTGTGTTTTCAGGACTGTAGTTTTCATCATTGTGTTGCTTACCAAACAGACCTCTTGACTGTAGAATCCAGTCTGATCCCCAAACAACCCTCTCTGTCTCCCTGCAAAAAGGAGGGCAAGAAGGGAGAAGAACCTTCTTTTAAGGCAACCTATAAGCATTCTCCTCACCATTTCTACTTCAAACACATTGGACAGAATGAAGTCACATGAGTGACCACATTGAGCTGCAGGGAAATCTGGGCGATGCATTGTATGTGTGCTAAGATTATTACCTCTGAGTAAGGAAGAATGGGTCTTGGGGAAAACTAGCAATCTCATTTTCCCATAGTATCTTATGTGCATTTACTAGGTATTGGAGTAAGCTTCATGAAGAAATGAGTTACTTATTAAAGCCCATTATCTATTACA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGCATTTACTAGGTATTGGAGT
57.69
CACGGAAACATCTCTCCAGCT
60.07
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGCATTTACTAGGTATTGGAGT
57.69
ACGGAAACATCTCTCCAGCTC
59.79
143
PCR template sequence:
GCAATCTCATTTTCCCATAGTATCTTATGTGCATTTACTAGGTATTGGAGTAAGCTTCATGAAGAAATGAGTTACTTATTAAAGCCCATTATCTATTACAGTAAGTAGATGGGCTGTCAGTTTGGGTGTTAGTAGAAAGTGTTACTTAAGAGCTGGAGAGATGTTTCCGTGGTTACGAACTCTGCTTTTCCAGAAGATCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-139-5p(1), mmu-miR-1187(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTATCTATTACAGTAAGTAGATGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.789359062
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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