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Database for pancreatic islet circular RNAs
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mmu_ciCry2_580
Basic information of circular RNA
PanCircBase ID:
mmu_ciCry2_580
mm39_Chr. Position ID:
chr2|92252642|92253222|-
Gene name:
Cry2
Transcript:
ENSMUST00000090559.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
580
Exon/intron sizes in nt:
580
Flanking exon/introns:
chr2:92252595-92253222
Splice length:
580
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGCCCTACAGCACACCACACAGGCCGCTGCTTCCTGTGGGGGACGTGGCCTTCCTGTTTCCTTGTCAAAGTTAGAAAATACTGGCTTAGTGGCTCATGCCTGCAATCCTTGAAACTGAGAGACAGAGGCAGGAGAAATAGGCCAGCCTGGACTACATGAGACCTTGTCTTAAAAAGGAAAAGAAAAACAGAAAAGGTTGCTGTTATCCACCATATGACCAGTTAGTTAACTACCTGTGCCCGGCCAGGCTGCTGCTGTTTGTAGCTGAAGCCTCTTTCTGTAGTTCCCTCTCTCCATCAGTAGAGGCACTGTCTGGTGCTGGTCAGTGGACTTCCTCACTAGGATAACTAATCCAGGCTTTAGGTACCCAGCCCACCTTCCTGCCTCCCTCCTCCTGCCCACACCATCTTCTGATCTGAATAAAGCTAACCTTCTGCACTTTAAGGGTTTTCTCAGTCCTCACAGCACCAAGTCCAAGGTCTGTAGTTCCGTTTAAAGAGCAGATCAGTCTGAATCGTGGAAATTACCATTTTTATATTTGTGAATCATCTTAAAGGTGTTTACTGAGCTGTTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCGTTTAAAGAGCAGATCAGTCT
59.78
AAGGAAACAGGAAGGCCACG
60.54
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCGTTTAAAGAGCAGATCAGTCT
59.78
ACAAGGAAACAGGAAGGCCA
59.44
158
PCR template sequence:
AAGGTCTGTAGTTCCGTTTAAAGAGCAGATCAGTCTGAATCGTGGAAATTACCATTTTTATATTTGTGAATCATCTTAAAGGTGTTTACTGAGCTGTTTCGTGAGTGCCCTACAGCACACCACACAGGCCGCTGCTTCCTGTGGGGGACGTGGCCTTCCTGTTTCCTTGTCAAAGTTAGAAAATACTGGCTTAGTGGCTC
Note: Users can design additional primers for provided template sequence using
Primer3
or
NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs
(#binding sites)
mmu-miR-30e-5p(1), mmu-miR-34a-5p(1), mmu-miR-106b-5p(1), mmu-miR-30a-5p(1), mmu-miR-383-5p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
ACTGAGCTGTTTCGTGAGTGCCCTAC
siRNA sets