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mmu_ciCopg1_141
Basic information of circular RNA
PanCircBase ID:
mmu_ciCopg1_141
mm39_Chr. Position ID:
chr6|87872743|87872884|+
Gene name:
Copg1
Transcript:
ENSMUST00000113607.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
11
Exon/intron offsets:
0
Genomic length:
141
Exon/intron sizes in nt:
141
Flanking exon/introns:
chr6:87872743-87872908
Splice length:
141
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGTTGAGTGGAGAGGAGGGGATGCAGGCTGGTCCAGCTGCTGTCTCCTTTCCCTGAATGGACTGGGAGGCGGGTAGACATGGTCCCCAAAGGACCTCTGGCCAGGCCAGAGGTGAAATGACAGAATTGGGTACTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGTAGACATGGTCCCCAAA
59
AAAGGAGACAGCAGCTGGAC
59.96
121
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTAGACATGGTCCCCAAAGG
60.06
AAAGGAGACAGCAGCTGGAC
59.96
120
PCR template sequence:
AGGCGGGTAGACATGGTCCCCAAAGGACCTCTGGCCAGGCCAGAGGTGAAATGACAGAATTGGGTACTGCGTAAGAGTTGAGTGGAGAGGAGGGGATGCAGGCTGGTCCAGCTGCTGTCTCCTTTCCCTGAATGGACTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-324-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AATTGGGTACTGCGTAAGAGTTGAGT
siRNA sets
CAACTCTTACGCAGTACCC, AACTCTTACGCAGTACCCA, TCAACTCTTACGCAGTACC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CICOPG1_141_ORF_1
0.7976
-0.085977439
0.028977779
84
ORF sequence:
ATGGACTGGGAGGCGGGTAGACATGGTCCCCAAAGGACCTCTGGCCAGGCCAGAGGTGAAATGACAGAATTGGGTACTGCGTAA
Peptide sequence:
MDWEAGRHGPQRTSGQARGEMTELGTA
IRESfinder result
IRESfinder score
0.303761573
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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