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mmu_ciChga_688
Basic information of circular RNA
PanCircBase ID:
mmu_ciChga_688
mm39_Chr. Position ID:
chr12|102521429|102522117|+
Gene name:
Chga
Transcript:
ENSMUST00000021610.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
688
Exon/intron sizes in nt:
688
Flanking exon/introns:
chr12:102521429-102522143
Splice length:
688
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGCGGCTCCGGGCTGGGCAGCACGATCCCCTCTCTTGCCCCAGGTCCCTAGAGGAGCCGGAGGATTCAGCACCTCGGACAGCACCAGGTCTCCTGCTTGAGTCCAGGCGCAAGACCCATAATGTTGGCTATGGTCGCCCACCACACCCGAAGAAACTATAAAGCCTGACCCAACCCCACTGGGCAGACCATCCCCACCCATGTCCGCACACCACCCACTGGTGCTCTGGCTCCACGCCGACCAAGGTCACTGGGGGGAGATAGGGGACTGGCGCGGGCTTCTCAACCCCTCTCCTGTCCTTCCACCCTCCAGCCTGTCCTTGATCTCTTCCCTCACCCCTGCTCTTTCCCGCCACGTCTGGGGTTTCTCCCCTTGCCTGCCTCTGTTCCTATCTCAGTCCCACTACATGGCTGGGCCTGGGCTTGTTTTCATTGAACTTGATTTCAGCTCTGTATTCCCATGGGGAAGGGTTGAGGCTCTTCAGTGCAGCCTCTGAGCCCAGCCCCCCCCCGGGGGTGCAGCATGGAGGGGGGGATAGCAGAATCAGTGCTGCTAACTTATTTGGGTTTTGAGGGTGTGTTGGTTGGTGGGTCCCTTGAGCCTCCCGCAGGGAAGGACTGGGGTTCCCTCGTTGCAGAGAGATAGCCCCAATTAGCAATCTCAAGTGCTCTCTCTCTCGCTCTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGTTCCCTCGTTGCAGAGAG
60.39
GTCCGAGGTGCTGAATCCTC
60.18
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTGCAGAGAGATAGCCCC
60.25
CTGTCCGAGGTGCTGAATCC
60.46
140
PCR template sequence:
GGTGGGTCCCTTGAGCCTCCCGCAGGGAAGGACTGGGGTTCCCTCGTTGCAGAGAGATAGCCCCAATTAGCAATCTCAAGTGCTCTCTCTCTCGCTCTCTGTGAGCGGCTCCGGGCTGGGCAGCACGATCCCCTCTCTTGCCCCAGGTCCCTAGAGGAGCCGGAGGATTCAGCACCTCGGACAGCACCAGGTCTCCTGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-709(1), mmu-miR-296-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTCTCGCTCTCTGTGAGCGGCTCCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.776343283
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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