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mmu_ciCep350_800
Basic information of circular RNA
PanCircBase ID:
mmu_ciCep350_800
mm39_Chr. Position ID:
chr1|155736593|155737393|-
Gene name:
Cep350
Transcript:
ENSMUST00000138762.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
34
Exon/intron offsets:
0
Genomic length:
800
Exon/intron sizes in nt:
800
Flanking exon/introns:
chr1:155736586-155737393
Splice length:
800
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTATTTATCTAGAGAAGAGTCTGATTGCCTTCCTTTGTAGCATCCACTAGTTCTGTTTGGGATGACATTTCCCCAGCCTGCTGCTTATTAAATACTATTTTTAGAGGACTTGTAGCTGTTTTTCCATCTGAGGTATAATTGCCCTCTGTTATGTCATGAGTAGTCACCATAGGGTTGTCATGAACACTGTCAGGTTGTAGAAACTGAAACTTCTTTTAAACTACTCTGTTGATGGCCCCTATATACAGTCCACATGTTATATCTCTTTCCACATTCCTTGGAACTTCCCAGTGGTTCTCAGCCCAGGTCTCTTTCACTCGTCTATTCAGTAATGGTTCCCTACAGAGATTAGCAGTTGTGGTGATGATTCTGATAAAACTGAAACAGAGCCTCTATGACATAGACTCAGACTGTCAGCTGTGTAGGTTGCCCATGGATAACTAAGGAAAGGGATGATTTTGATTAACTTGAGCCAGATAATCACCAAAGGTAAGGCTTTTCATTTCCCATGTCAGAATCCTAGTGATAGTCCTTCAGAAATAGAATGATTCATGATATGTAAAAGGAAAAAAAAAACTAATGAATAAATATTTTATTATAAAATTTAATGACTAGGTTTATATAAGCAAAAGAGTGGAAAGAAGATAGATTTTTCTTATTCATCAGTGACCATTATATTGTAATTTTGCATTTCTTACAGAGATATTAAAACACGTAAGTAATAGGTGTGCATTATCTTTCAAAAGCTGTTAGGTAAGGCAAAGTCACTAAATGGTCCTTTATTTGAATGTTTATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCAAAAGCTGTTAGGTAAGGCA
57.91
AGGCTGGGGAAATGTCATCC
59.74
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCAAAAGCTGTTAGGTAAGGCAA
58.53
AGGCTGGGGAAATGTCATCC
59.74
140
PCR template sequence:
ACAGAGATATTAAAACACGTAAGTAATAGGTGTGCATTATCTTTCAAAAGCTGTTAGGTAAGGCAAAGTCACTAAATGGTCCTTTATTTGAATGTTTATTGTGAGTATTTATCTAGAGAAGAGTCTGATTGCCTTCCTTTGTAGCATCCACTAGTTCTGTTTGGGATGACATTTCCCCAGCCTGCTGCTTATTAAATACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-1a-3p(1), mmu-miR-199a-5p(1), mmu-miR-206-3p(1), mmu-miR-410-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGAATGTTTATTGTGAGTATTTATC
siRNA sets
TAAATACTCACAATAAACA, ATACTCACAATAAACATTC, AAATACTCACAATAAACAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.867678844
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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