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mmu_ciCct4_414
Basic information of circular RNA
PanCircBase ID:
mmu_ciCct4_414
mm39_Chr. Position ID:
chr11|22947154|22947568|+
Gene name:
Cct4
Transcript:
ENSMUST00000173867.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
414
Exon/intron sizes in nt:
414
Flanking exon/introns:
chr11:22947154-22947602
Splice length:
414
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCGTCTCTGATTTCAATTTCAGTTTTGCCAAAACCAGATAACTTTGAAGAACAACTAGGGGTGGCTTATACATTTAGTGCCAGCAATTGATTGGCTGAGGTGGGAGGCTAGCTATGAGTTCAAGGCCAGCCTGGAATAAATAGTGAGTTCCATGACAGGCTGAGCTAGAGTGAGGTTCTGTCTCCACAAAACCCTTTAAAAACAAAGATGTTCTTAGTCCGATTACCTTTCTGCCTGGGCCAGTGGATGTAACATAAGTGAAAATAACTCTGAAAGTGAACATTAGAAATACTTGCTGACTTAAACTTTATTATATATGGTATCCTCAAGGGTTTGCCTGTATTTCCTTATGGTAGGATGGAAGTATATCCAAGAGGTCCCAGAATGGGTTCTGAGAATGAGTAAGACCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCCTCAAGGGTTTGCCTGT
59.22
GCCACCCCTAGTTGTTCTTCA
59.93
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTATCCTCAAGGGTTTGCC
59.99
GCCACCCCTAGTTGTTCTTCA
59.93
162
PCR template sequence:
TTATATATGGTATCCTCAAGGGTTTGCCTGTATTTCCTTATGGTAGGATGGAAGTATATCCAAGAGGTCCCAGAATGGGTTCTGAGAATGAGTAAGACCAGTAAGCGTCTCTGATTTCAATTTCAGTTTTGCCAAAACCAGATAACTTTGAAGAACAACTAGGGGTGGCTTATACATTTAGTGCCAGCAATTGATTGGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-182-5p(1), mmu-miR-3087-3p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGAGTAAGACCAGTAAGCGTCTCTG
siRNA sets
ACGCTTACTGGTCTTACTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CICCT4_414_ORF_1
0.7818
-0.181576141
0.022496871
108
ORF sequence:
ATGGTATCCTCAAGGGTTTGCCTGTATTTCCTTATGGTAGGATGGAAGTATATCCAAGAGGTCCCAGAATGGGTTCTGAGAATGAGTAAGACCAGTAAGCGTCTCTGA
Peptide sequence:
MVSSRVCLYFLMVGWKYIQEVPEWVLRMSKTSKRL
IRESfinder result
IRESfinder score
0.742941534
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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