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mmu_ciCcdc77_2736
Basic information of circular RNA
PanCircBase ID:
mmu_ciCcdc77_2736
mm39_Chr. Position ID:
chr6|120308993|120311729|-
Gene name:
Ccdc77
Transcript:
ENSMUST00000032283.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
2736
Exon/intron sizes in nt:
2736
Flanking exon/introns:
chr6:120308992-120311729
Splice length:
2736
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGCGGACTCAAGAAATACCGTCCTAACGGGCGTCCTGTTTTTCTGAATGGCTTAAGAGATGGCTCAGCTGTTGTGAGCACTGCTCTTACAGAGGACCCAGGTTCAGTTCCCAGCATGCACATCAGGTGGCTCACACCATCTGTAAGTCCAGTTCCTGGGGCATCTGCCACCTCTGACCTCCACAGATGAACTCACACAGGTACACATTAAAAAAAATCTAAGCCAGGTGATGGTAGCGCACACCTTTAATCCCAGCATTTGGGAGGCAGAGGCTGGTGGATCTCTGAGTTCAGTGCCAACCTGGTCTTCAGAGTGAGTTCAGTAGTAGTGGCCTAGCCTAGGGTGTATTGAGCCCTGAGTTCACCAGGAATAAAAAATAAAGATTAATGGTTATGGGGATAGAGAGATGGCTCAGTTGTTAAGCGCACTCCCTGCTTTTGTGCAAGAACCCAGTTCAAGTCTTGGCACCTGCAGCCCCCGCCTCTCCAGTGGTGCTTTAGTTTAGTTTGTGCTTCGGTGAGGTTAATAATTTAGGAACAGTTGTTTTTAGCAAGGGCATCACTAGGCACAGCAAGCCTTGAGCTGAAGACTTACTCAGACCAAATCCACATCTCCGTAATGGCTAGTGTGGCTTTATGATGGACCCCCCCTCCATACACACGCACACACTCATACACACACGCGTGTATGCACATGCACACACCATGTGGCGTTCTTACATCTTTGTTCCCTGGCTTCTTTCTGTTGACCTCAGTCCTACCCTGTGTGCAGAGTAGCCACAAGATATGGTTTGGGGTTTGTTTTTTTGTTTTTTTGAGATAGTTTCCCTCTGTAGCCTTGACTGTCCTGGAATTTGCTTTGTAGACCATGGTCTAGAACTCATTGACCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATCAGAGACAGGCATTTGCCATCCCCTAGCTTGATGATTTTTGTTATGTTGTACCTAACCATCTCTTTTCTCCATTAAACATGCTTAATGCATTTTTATTTAATTTTAACTTTCCAGATAGGTTCTCACTATGTTTCTCTGCCTGGCCTAGAAAACTCTGTGTAGTGGAGGAGGTTGGCCTTGAAAACACAGGGGTCCCCCTGCTTCTGCATTCTCAAGTACTGGAAGTACGGGTGCCTGCCTGCCCATCACCACGCCGGTCTCCTGTTTAGCACGTGGCTGTGTGTTTAAGTGTGTAGGGATAGATGTGTGTGTTAGATGGAGGCCACAGGTCACCCTTGGGTGCTGTTTCTTGTTTTTTGACATGGAACACAGCCAGGCCTGGTGTTCATTGACATGGAAAACAGTGACTAAGCTCAGCTACGGTCAGGAAGGCCAGGGGTTTGCTCGTCTTCCTCCCCTGCGTTGAGGATTTTAGGTTTCTTACTTGGAGGAGAGTTGAGGTCTTCATGCTCACTCAGCAAAGGCTTCACCATCTGAGCGTTTTTTGTTTTTTTAATATTTATGATTTATTTTTTTGTGTATGCATGTTTTGGCTGCATGTTTGTCTGTACACCACTTTCCATGCCTGGTCTCTGAGGAAGCCAGAAGAGAATGTCGCATTCCATGGAACTGCGGTGCTGGGAATTGAAGCTGGGTCCTCTAGAAGAACAGCAAATGTTTTTAACCATTGAACTATCTCTCCAGCCCCAAATTTATTTATTTTTGAGACGGGGTCTCTAGGCAGGCTGGTCTCAGAATCCCCATGTAACCAAGGATTACCTTGAACAACTTAGAGTCCTGTCTCTACCTTCCAAGTGCCAGGTCTGCAGGAATATTCCTCTATAGCCCAGTTATGAAGTGCTGAGACTTGAACTCAGGACTTTGTACATGCTGGGCAAACACTTCACCAATTGAGTTAACATTCCCAGCCCTAAATTTATTCAATTTTGGTTTTGGGGTATTTTTGAGGCAGGGTCTCACTATTTAGATTTGGATGGCCTTGAACTCAGAGATCTGTCCTGCCTCCTAGATGCTGGGATTAAAGACACCACTGAGCCTGGCTGTTTATTTAGTTTTGGGAGCATATTGGGTATTAAATGGGGCTTCACACATGCAGAGCAAGCACTGTACCACAAAGCTATACTCTCAGCTCCTAATATGTGATTTAAAAATTAAAAAAAAATATTTTAGCTTTTAACTATATGTATATCTAGGAGTCTGTGTATTTATGAATGCAATTGCCCATAGACTCCACAAGAGGTCAGAGCAGTATGTACTGTCAGCCACTGATGAGCCATCTCTCGAGCCCAAACTTTTTATATTTTATATTAGTTTTCCAGTATGTAATAACCATCTTTTTAACCTGAATTCTCAAATGTACACTCAGGAACGTTTCTATAAAGACAAATCTAAGCCAAGGAGCATGATAGATGCAAGGCAGTTCCCCAAATCAAGCATGTAAAACTGTCAGTGATCAGACTGTGTGTGTTTTTAAAACTGCTAATATTTCAAAATTCATATTGTACAGTTTTGCCAGGTGGTGGAGGTACACACCTTTAATCCCAGCACTTGGGAGGTGGAGGCAAGCAGAGCTCTGAATTTGAGCTCAGCCTGGTCTACAGAGTGAGTTCCAGGACATCCAGGGCTACATAGAGAAACCCTGTCTCCAAAAAAAAAAAGTACAACTTTTAAAGACCTTGTCATCCTCTTTGGAATGGCCCTGTGATTGAGCCGTGCAGCGAGCATCTCCATGCTCACAGCTCTTCTCTCTTTCGTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCTTTGGAATGGCCCTGT
59.96
TCACAACAGCTGAGCCATCT
59.31
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCTTTGGAATGGCCCTGT
59.96
CAGTGCTCACAACAGCTGAG
59.13
156
PCR template sequence:
AAGTACAACTTTTAAAGACCTTGTCATCCTCTTTGGAATGGCCCTGTGATTGAGCCGTGCAGCGAGCATCTCCATGCTCACAGCTCTTCTCTCTTTCGTAGTGCGGACTCAAGAAATACCGTCCTAACGGGCGTCCTGTTTTTCTGAATGGCTTAAGAGATGGCTCAGCTGTTGTGAGCACTGCTCTTACAGAGGACCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-709(2), mmu-miR-1187(2), mmu-miR-3087-3p(2), mmu-miR-3470b(2), mmu-miR-574-5p(2), mmu-miR-210-3p(1), mmu-miR-7b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-185-5p(1), mmu-miR-494-3p(1), mmu-miR-96-5p(1), mmu-miR-382-5p(1), mmu-miR-541-5p(1), mmu-miR-362-5p(1), mmu-miR-690(1), mmu-miR-484(1), mmu-miR-466b-3p(1), mmu-miR-540-3p(1), mmu-miR-99a-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTCTCTTTCGTAGTGCGGACTCAAG
siRNA sets
AGTCCGCACTACGAAAGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.837589528
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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