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mmu_ciCcdc186_843
Basic information of circular RNA
PanCircBase ID:
mmu_ciCcdc186_843
mm39_Chr. Position ID:
chr19|56779529|56780372|-
Gene name:
Ccdc186
Transcript:
ENSMUST00000118592.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
843
Exon/intron sizes in nt:
843
Flanking exon/introns:
chr19:56779478-56780372
Splice length:
843
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATTTGTGTTTCTTATTTATTTGCCACTCAGTAACCAGGGCAGGATGGCGCCTCTGCCATAGTCTCACCTAGCGTCAGGCTGGTTTTCTTTTTTCTTTTTTTAAAATTTATTTTTTATTTCTATGAATACACTGTCACTGTCTTCAGACACACCAGAAGAGGACGTCAGATCCCATTACAGATGGTTGTGAGCCATCACGTGGCTGCTGAGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTTCTCTTAACCGCTGAGCCATCTCTGCAGCCCCAAGCTGTTTTACTAGTACAGGGTGTCTTGGTACTCAGAGATAAAGTGACGTAGTTACTGGGCAGAAACTGAGGCCGATTGTTTGCTTCACAGTGGATGCCGTTTGCAGAATGAGTATACCCAGTTACAACTTCAGTATTACAACATTTAAGTATATTTTGTGGCTTTTTTTTAGCTGTTGTCTCTGACCCAACGTTTCTGTCTTTGCTATGTATGCATGGACTTGATAACTAGGAATAGATTTTAAAAATAGTTTTAAACCAAAGTAATCATTATGCACGAAAACTTGCTGTAGCTGCAGTAAAAACATTATAACGTGGGGCAGGCCGTGGTACCGCACACATTTAGTCCTCACAGAGGCAAGACGCCTATGAGTTTGAAGCCAACCTGGTCTGTGTACAGAGTGACTTCCAGGACTACATAGAGAGAGCCTGTTTCAAAAAAGAATTATAACGGCAATGGGCAGGCCTATTTCGCTAAAACCTCCATGTTTAGACTATGTCAGTACCAAGAATAATCACTCAGCTTCATAGTTTAGACAAAAGTGGTTCAAAAGATATTTACTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTATTTCGCTAAAACCTCCA
58.72
CTGCCCTGGTTACTGAGTGG
60.04
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTATTTCGCTAAAACCTCCA
58.72
CCTGCCCTGGTTACTGAGTG
60.04
145
PCR template sequence:
GCCTATTTCGCTAAAACCTCCATGTTTAGACTATGTCAGTACCAAGAATAATCACTCAGCTTCATAGTTTAGACAAAAGTGGTTCAAAAGATATTTACTTGTATTTGTGTTTCTTATTTATTTGCCACTCAGTAACCAGGGCAGGATGGCGCCTCTGCCATAGTCTCACCTAGCGTCAGGCTGGTTTTCTTTTTTCTTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-155-5p(1), mmu-miR-134-5p(1), mmu-miR-146a-5p(1), mmu-miR-298-5p(1), mmu-miR-127-5p(1), mmu-miR-382-5p(1), mmu-miR-466d-3p(1), mmu-miR-384-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-3470b(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAGATATTTACTTGTATTTGTGTTTC
siRNA sets
AAACACAAATACAAGTAAA, ACAAATACAAGTAAATATC, AAATACAAGTAAATATCTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CICCDC186_843_ORF_1
0.5826
-0.423789865
0.007287466
141
ORF sequence:
ATGTCAGTACCAAGAATAATCACTCAGCTTCATAGTTTAGACAAAAGTGGTTCAAAAGATATTTACTTGTATTTGTGTTTCTTATTTATTTGCCACTCAGTAACCAGGGCAGGATGGCGCCTCTGCCATAGTCTCACCTAG
Peptide sequence:
MSVPRIITQLHSLDKSGSKDIYLYLCFLFICHSVTRAGWRLCHSLT
IRESfinder result
IRESfinder score
0.862587503
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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