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mmu_ciCbr2_105
Basic information of circular RNA
PanCircBase ID:
mmu_ciCbr2_105
mm39_Chr. Position ID:
chr11|120622641|120622746|-
Gene name:
Cbr2
Transcript:
ENSMUST00000026148.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
105
Exon/intron sizes in nt:
105
Flanking exon/introns:
chr11:120621929-120622746
Splice length:
105
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGTGAGCGGGGAAGGGGATGAGTGTGAGCAGGGGAATGAGGTGAGTGTGAGCCGAGAAGTGAGGTGAGTGTGAGCAAGGAAGTGAGGTATGAGTGGGGAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCCGAGAAGTGAGGTGAG
59.83
GCTCACACTCATCCCCTTCC
60.11
86
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCCGAGAAGTGAGGTGAG
59.83
CTCACCTCATTCCCCTGCTC
59.82
102
PCR template sequence:
GAGCCGAGAAGTGAGGTGAGTGTGAGCAAGGAAGTGAGGTATGAGTGGGGAAGTGAGTGTGAGCGGGGAAGGGGATGAGTGTGAGCAGGGGAATGAGGTGAGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-342-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATGAGTGGGGAAGTGAGTGTGAGCG
siRNA sets
TCACACTCACTTCCCCACT, CACACTCACTTCCCCACTC, ACACTCACTTCCCCACTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CICBR2_105_ORF_1
0.8861
0.279361369
0.135654643
84
ORF sequence:
ATGAGTGGGGAAGTGAGTGTGAGCGGGGAAGGGGATGAGTGTGAGCAGGGGAATGAGGTGAGTGTGAGCCGAGAAGTGAGGTGA
Peptide sequence:
MSGEVSVSGEGDECEQGNEVSVSREVR
IRESfinder result
IRESfinder score
0.273343595
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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