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mmu_ciCbl_792
Basic information of circular RNA
PanCircBase ID:
mmu_ciCbl_792
mm39_Chr. Position ID:
chr9|44064265|44065057|-
Gene name:
Cbl
Transcript:
ENSMUST00000206720.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
792
Exon/intron sizes in nt:
792
Flanking exon/introns:
chr9:44064265-44065057
Splice length:
792
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGGCCTGTCTTCTACTTAAAAATTGACTTATGTGGTAGCACCTGTCTGTAAAATGTCAGTACTTGGGCTTGTGAGGCAAAAGGATTGCAAGTTTGAGGCCAGCTTGGCCTGCATAGCAAATACCCTGTCTGGGAAGAGAGGGAGACCGTAGGGTTGCTCTGTAACATTTGGTTGATATAGCTTAAACCGAGGAGAAAAGTATTCTCAGTACTCTTGTTCAGAGGTCTTTGATTTGTGGACAAGATGGACCCACTTGTCTTTCCAGACACTCAGTCCTGTTTTTCCCTCCTCTCAGGGCCTGGAGACATCTGTTATATGGCTATTACATAGAGATAGCTGTTCTATCTCAGTATTATCAGCTTTCTTGTAGTTACATTACATTGATGAAACTCTTTTGTGTGGGGGTGGTAGGTACTCAGTTCCCAAGTTAAGCAGCTTGCCAAGGGGAAAGTTCAAGAAGCCTTCACGCACAGCCTTTGACTGATCTTCTTAGGTGAGATGCAGAGGAGGCTCTAAAATAGCTCTCGGGACTCTTGCTTCAGTAGTTATTAACCACAGCAGAGGTGACTGTTGACATGCTCAACAAGAGAGAGAGCTGGTACAGGCTTAACTCACCTCTCTCCACAGGACCTCAAATGGTATTTCATCCACAGTGGACATTTGAGTAACTGTTGAATGAAATAAATGGTTGTGTGCATGTGTGAATAATGGCTGCCTCTGGATTGAAGTGTGTTGGAAAGTGATGTCAGGAGATGTCGGACAGTAACTTACACCAGCTTTCTACTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTGCCTCTGGATTGAAGT
60.03
GCCTCACAAGCCCAAGTACT
59.96
160
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGCCTCTGGATTGAAG
60.03
GCCTCACAAGCCCAAGTACT
59.96
161
PCR template sequence:
GTTGTGTGCATGTGTGAATAATGGCTGCCTCTGGATTGAAGTGTGTTGGAAAGTGATGTCAGGAGATGTCGGACAGTAACTTACACCAGCTTTCTACTAGGTAAGTGGCCTGTCTTCTACTTAAAAATTGACTTATGTGGTAGCACCTGTCTGTAAAATGTCAGTACTTGGGCTTGTGAGGCAAAAGGATTGCAAGTTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(2), mmu-miR-132-3p(1), mmu-miR-680(1), mmu-miR-377-3p(1), mmu-miR-410-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCTTTCTACTAGGTAAGTGGCCTGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.779325216
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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