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mmu_ciCatsper2_165
Basic information of circular RNA
PanCircBase ID:
mmu_ciCatsper2_165
mm39_Chr. Position ID:
chr2|121240692|121240857|-
Gene name:
Catsper2
Transcript:
ENSMUST00000154604.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
165
Exon/intron sizes in nt:
165
Flanking exon/introns:
chr2:121240687-121240857
Splice length:
165
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATCCTTTTGTGCTCTTATCTATGGCTGTTCCTCTCCTGTTGGTTACTTTTCCTCTCTCAAACTGTTTCCTTCAAATCCTCATATCTGACATTGTAGTCTTTATTATTTAAGCTGTATAAATGAGAACGCACTTCATCAGCATGCTTCCTTAAAAGAAAAAAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACGCACTTCATCAGCATGC
59.83
AGGATTTGAAGGAAACAGTTTGAGA
58.87
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACGCACTTCATCAGCATGC
59.83
GAGGATTTGAAGGAAACAGTTTGAGA
59.74
121
PCR template sequence:
TATCTGACATTGTAGTCTTTATTATTTAAGCTGTATAAATGAGAACGCACTTCATCAGCATGCTTCCTTAAAAGAAAAAAAAGTATCCTTTTGTGCTCTTATCTATGGCTGTTCCTCTCCTGTTGGTTACTTTTCCTCTCTCAAACTGTTTCCTTCAAATCCTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AAAAGAAAAAAAAGTATCCTTTTGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.941086119
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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