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mmu_ciCad_603
Basic information of circular RNA
PanCircBase ID:
mmu_ciCad_603
mm39_Chr. Position ID:
chr5|31232529|31233132|+
Gene name:
Cad
Transcript:
ENSMUST00000013773.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
35
Exon/intron offsets:
0
Genomic length:
603
Exon/intron sizes in nt:
603
Flanking exon/introns:
chr5:31232529-31233152
Splice length:
603
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGAGGTGGCTGCGGCACGGAGCAGGCCCTTTCCTACTGACTTGTACAGGGACAGATGCTGTTCCACATAGCCTGATTGATGGAGGGATGGGACCTGTTCTACATCGTGTCCTTAGTAGGCCAGGGTTGGGGGCCCAGTCTCTTCTCAAGCCTCTCTTTCAAGTCCCTTTCTTGCCACACTCTCTTGCCCTTGCACCTAGTCTGATCCACTGTACCCTACTGAAGTAGTTACTGCAGCAGGAAGTAGCATCTTCTCACAGGCCTTTTTCTGTTGTGGGCAGCTCTGTACCTCCGCCCAGGAGCTGGGATCTCATGGGGCAGCAGAGCATGGGGTAAATCCCGCTTGCTGGTTGGTGTGAACTTGGCCATTCCTCTGCCTCAGATCCTTTATGCCAGCTGGGAAGGCCCTGGGAGGGCACACTCGGCCCATACAGCACAGCACCACAGGGAGTCCTGGGTTCCTCCCCATAGATGCTGCACCCTTCCTGCCTCCCCTAACCTGCTGTAGCACCTGTGATTTGAGGTGGCTTTAACACAAGCACTGGGAGCAGAGGTCATTGTGATTTGGGCCCACTGCACCATAGCCACCAGGTGACCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGAGCAGAGGTCATTGTG
59.67
AGGTCCCATCCCTCCATCAA
59.95
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TAACACAAGCACTGGGAGCA
59.53
TGTGGAACAGCATCTGTCCC
59.96
141
PCR template sequence:
CTGCTGTAGCACCTGTGATTTGAGGTGGCTTTAACACAAGCACTGGGAGCAGAGGTCATTGTGATTTGGGCCCACTGCACCATAGCCACCAGGTGACCTCGTAAGAGAGGTGGCTGCGGCACGGAGCAGGCCCTTTCCTACTGACTTGTACAGGGACAGATGCTGTTCCACATAGCCTGATTGATGGAGGGATGGGACCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-296-5p(1), mmu-miR-103-3p(1), mmu-miR-150-5p(1), mmu-miR-31-5p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-214-3p(1), mmu-miR-22-3p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-383-5p(1), mmu-miR-300-3p(1), mmu-miR-3061-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCAGGTGACCTCGTAAGAGAGGTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.711270395
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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