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mmu_ciBraf_684
Basic information of circular RNA
PanCircBase ID:
mmu_ciBraf_684
mm39_Chr. Position ID:
chr6|39616700|39617384|-
Gene name:
Braf
Transcript:
ENSMUST00000002487.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
684
Exon/intron sizes in nt:
684
Flanking exon/introns:
chr6:39616700-39617384
Splice length:
684
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGCGAGTGGCCACAGCTTTCCAGTGCAGTGACCTAAAGAAACAAAGTGTGGCTGCTTAGACTTCACGTTCCCATTGTTGTCCACCGTTTGCTCCTGCATCTAGAAAACTGAATTAATGGAAATAAGAAATGTCTGATTGTGTCTAATAGTAGTTCCTTTTAGGAAAGTAATACTCTAAATGTCCTAAATGTATCAAAACACGTTTAAAATTGTATTTAGTCCTAGGCCCTAGGACATGAGGAACATTGACAAATGAGAGAGAGTAAATCCATGATAAGAAAACTTAGGAAAGATTCTGTGGTTAAAATCTTATGTGAGGGGAGTGTTCAACCAAACTGAGGTTTTAATCCAGAGAAGTGTCTTGTATTCAAGAAGGTACACAGTTACTCTGCTATTGTAAAGAACAGAACGAGGAAGCTAGCTGTGGTGGTTAGAGGAAAATGGGTTTACGTCCACATAGAAAACCTCCTAATAAATTTGGAACAACTTAAACAAATGAAAGCAACCTCAGCTCCTAGCTTCCTCATTCGATATGTTTCTGTATTTCTGAGTGGAGCTGGAGGTTAAACTCAGTAATTAGAGCTCAACCTTGCTGTGTTTCTGGTACTTTTTCCTTGAGCACCGTATTGATTTGACTCTCTTTAAAGAATTGTTACTCATTGTCACGTTTCTTTTTGGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTTTTTCCTTGAGCACCGT
57.95
ACGGTGGACAACAATGGGAA
59.82
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTTTTTCCTTGAGCACCGT
57.95
AACGGTGGACAACAATGGGA
59.82
167
PCR template sequence:
GCTCAACCTTGCTGTGTTTCTGGTACTTTTTCCTTGAGCACCGTATTGATTTGACTCTCTTTAAAGAATTGTTACTCATTGTCACGTTTCTTTTTGGCAGGTGAGCGAGTGGCCACAGCTTTCCAGTGCAGTGACCTAAAGAAACAAAGTGTGGCTGCTTAGACTTCACGTTCCCATTGTTGTCCACCGTTTGCTCCTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-381-3p(1), mmu-miR-494-3p(1), mmu-miR-382-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCTTTTTGGCAGGTGAGCGAGTGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.849221626
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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