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mmu_ciBirc6_774
Basic information of circular RNA
PanCircBase ID:
mmu_ciBirc6_774
mm39_Chr. Position ID:
chr17|74915279|74916053|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
23
Exon/intron offsets:
0
Genomic length:
774
Exon/intron sizes in nt:
774
Flanking exon/introns:
chr17:74915279-74916053
Splice length:
774
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTGGAGACTCTTTGGCTCTTTGTTCATGCTGTCTCTAAACTTCAAAAGCTGAAAAGTAAAAATGTAAAAATGACCATTGTTTTCAGAAAGGAAAAGTAGCTTGTCCAATCTGAGCTAGTCGGTTTCAACAGAAAATTGAGGTAATGCCTTTGTGATATGTTTAAATGTATTACTCTATGATATGTTTAAATGGATTATTCTATGACTGCATTTTATTTAGGATGTGATTGAGAAAAAAATGATACTTTTTGAGTAGCCTTGAAGTCTCTTGTACTTTTATGTTTAAAAACTTTTGGAGAAACATTATATTGTTATCAGTTACTGTTTTCATGACACAGAGACTGTTGGACATTATAAATTGGAGGACATTAGTTTGATTCTAAGTACAGCAATTATGACAACATGGTTTATGGATTTAATTGCTGACTAAATGCAACCTGTGCAAACTCTGCTTGAGAAATTGTATCCTGTCAGTTAACAATGAATTCATTTGCTTCATTTTATTCTGTGCAGAGCTGGTTTCATTATTTATATTTAATGGTTCTGCTGGCTTTTCATTTTTTGAGCACTTTCTAGTTCCCTTAATATATAAGAAAATTTTGCATAATAACTAAGAAATGTTCCTAACAAGGCAGTGCTTCATGTGTTACGTCCAGTTTTGTCTCATGTAAGCAGAATCTTACTAATCTCACTTAAGTTTTTTATATATGATCATCAAGTGTCCTCACAACTTCGTCAGGACTCTTCTACAGGCATTGCTTTTACTTTTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCCTCACAACTTCGTCAGG
59.93
TCCTTTCTGAAAACAATGGTCA
56.11
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTCACAACTTCGTCAGGAC
59.66
TCCTTTCTGAAAACAATGGTCA
56.11
145
PCR template sequence:
AGAATCTTACTAATCTCACTTAAGTTTTTTATATATGATCATCAAGTGTCCTCACAACTTCGTCAGGACTCTTCTACAGGCATTGCTTTTACTTTTACAGGTTGGAGACTCTTTGGCTCTTTGTTCATGCTGTCTCTAAACTTCAAAAGCTGAAAAGTAAAAATGTAAAAATGACCATTGTTTTCAGAAAGGAAAAGTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-106b-5p(1), mmu-miR-132-3p(1), mmu-miR-212-3p(1), mmu-miR-690(1), mmu-miR-452-3p(1), mmu-miR-350-3p(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTACTTTTACAGGTTGGAGACTCTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIBIRC6_774_ORF_1
0.4774
-0.283410724
0.008223096
105
ORF sequence:
ATGATCATCAAGTGTCCTCACAACTTCGTCAGGACTCTTCTACAGGCATTGCTTTTACTTTTACAGGTTGGAGACTCTTTGGCTCTTTGTTCATGCTGTCTCTAA
Peptide sequence:
MIIKCPHNFVRTLLQALLLLLQVGDSLALCSCCL
IRESfinder result
IRESfinder score
0.918637573
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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